Gm57257 Gene Detail

Summary

• Symbol
  Gm57257
• Name
  predicted gene, 57257

• Feature Type
  lncRNA gene
• IDs
  MGI:7338427
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:9211832-9300984 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2409 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338427	lncRNA gene	Chr5:9211832-9300984 (+)
129S1/SvImJ	ENSMUSG00200002791	lncRNA gene	Chr5:5913896-6022407 (+)
A/J	ENSMUSG00195012472	lncRNA gene	Chr5:5919765-6008942 (+)
AKR/J	ENSMUSG00220002400	lncRNA gene	Chr5:5823355-5912374 (+)
BALB/cJ	ENSMUSG00180017246	lncRNA gene	Chr5:5671870-5761057 (+)
C3H/HeJ	ENSMUSG00175029069	lncRNA gene	Chr5:5848929-5938102 (+)
C57BL/6NJ	ENSMUSG00215025531	lncRNA gene	Chr5:6128718-6217888 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001823	lncRNA gene	Chr5:6008706-6108211 (+)
CBA/J	ENSMUSG00210002836	lncRNA gene	Chr5:6213280-6302412 (+)
DBA/2J	ENSMUSG00185029539	lncRNA gene	Chr5:6215465-6304621 (+)
FVB/NJ	ENSMUSG00205008305	lncRNA gene	Chr5:5918159-6007316 (+)
JF1/MsJ	ENSUMUG00000004016	lncRNA gene	Chr5:6256396-6346266 (+)
LP/J	ENSMUSG00230003449	lncRNA gene	Chr5:10171308-10276985 (+)
NOD/ShiLtJ	ENSMUSG00190013244	lncRNA gene	Chr5:5734343-5824191 (+)
NZO/HlLtJ	ENSMUSG00225008880	lncRNA gene	Chr5:13906717-14012403 (+)
PWK/PhJ	ENSLUMG00010019767	lncRNA gene	Chr5:6146770-6236474 (+)
SPRET/EiJ	ENSMSPG00010005009	lncRNA gene	Chr5:6079884-6181622 (+)
WSB/EiJ	ENSIUOG00005026555	lncRNA gene	Chr5:5934062-6038236 (+)

Homology

• Gene Tree
  Gm57257
  

Sequences &
Gene Models

• All Sequences
  42

• Ensembl
  ENSMUSG00000120248 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120248	Ensembl Gene Model | MGI Sequence Detail	89153	C57BL/6J
transcript	ENSMUST00000242091	Ensembl | MGI Sequence Detail	1938	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm57257:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45159	Chr5:9211833-9211873 (+)	21 bp
Tssr45160	Chr5:9211879-9211893 (+)	54 bp