Gm57253 Gene Detail

Summary

• Symbol
  Gm57253
• Name
  predicted gene, 57253

• Feature Type
  lncRNA gene
• IDs
  MGI:7338419
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:142804748-142822040 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  406 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338419	lncRNA gene	Chr5:142804748-142822040 (+)
129S1/SvImJ	ENSMUSG00200042174	lncRNA gene	Chr5:136678666-136679365 (+)
A/J	ENSMUSG00195045512	lncRNA gene	Chr5:136319682-136320381 (+)
AKR/J	ENSMUSG00220023244	lncRNA gene	Chr5:135556039-135556738 (+)
BALB/cJ	ENSMUSG00180033428	lncRNA gene	Chr5:136421744-136422443 (+)
C3H/HeJ	ENSMUSG00175048104	lncRNA gene	Chr5:138347320-138348019 (+)
C57BL/6NJ	ENSMUSG00215042501	lncRNA gene	Chr5:136255909-136256608 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035920	lncRNA gene	Chr5:135701711-135702410 (+)
CBA/J	ENSMUSG00210024208	lncRNA gene	Chr5:137148864-137149563 (+)
DBA/2J	ENSMUSG00185055478	lncRNA gene	Chr5:140155439-140156138 (+)
FVB/NJ	ENSMUSG00205044975	lncRNA gene	Chr5:135978087-135978786 (+)
JF1/MsJ	ENSUMUG00000052838	lncRNA gene	Chr5:143026760-143027459 (+)
LP/J	ENSMUSG00230031117	lncRNA gene	Chr5:144282441-144283140 (+)
NOD/ShiLtJ	ENSMUSG00190047604	lncRNA gene	Chr5:136117072-136117771 (+)
NZO/HlLtJ	ENSMUSG00225023884	lncRNA gene	Chr5:151751372-151752071 (+)
PWK/PhJ	ENSLUMG00010020846	lncRNA gene	Chr5:134740565-134741264 (+)
SPRET/EiJ	ENSMSPG00010041312	lncRNA gene	Chr5:138356426-138357117 (+)
WSB/EiJ	ENSIUOG00005039797	lncRNA gene	Chr5:138640710-138641409 (+)

Homology

• Gene Tree
  Gm57253
  

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000119979 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119979	Ensembl Gene Model | MGI Sequence Detail	17293	C57BL/6J
transcript	ENSMUST00000240915	Ensembl | MGI Sequence Detail	4414	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57253:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49593	Chr5:142804749-142804758 (+)	6 bp
Tssr49594	Chr5:142807539-142807573 (+)	2,808 bp
Tssr49595	Chr5:142807618-142807650 (+)	2,886 bp
Tssr49596	Chr5:142808339-142808353 (+)	3,598 bp