Gm57249 Gene Detail

Summary

• Symbol
  Gm57249
• Name
  predicted gene, 57249

• Feature Type
  lncRNA gene
• IDs
  MGI:7338411
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:28508727-28510054 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338411	lncRNA gene	Chr7:28508727-28510054 (-)
129S1/SvImJ	ENSMUSG00200046716	lncRNA gene	Chr7:18298402-18298651 (-)
A/J	ENSMUSG00195051568	lncRNA gene	Chr7:20976143-20976394 (-)
AKR/J	ENSMUSG00220053945	lncRNA gene	Chr7:23516855-23517107 (+)
BALB/cJ	ENSMUSG00180054007	lncRNA gene	Chr7:19035691-19035942 (-)
C3H/HeJ	ENSMUSG00175038466	lncRNA gene	Chr7:20063702-20063953 (-)
C57BL/6NJ	ENSMUSG00215055076	lncRNA gene	Chr7:18199391-18199644 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052775	lncRNA gene	Chr7:20005713-20005967 (-)
CBA/J	ENSMUSG00210053619	lncRNA gene	Chr7:19248277-19248528 (-)
DBA/2J	ENSMUSG00185053487	lncRNA gene	Chr7:22361016-22361269 (-)
FVB/NJ	ENSMUSG00205052857	lncRNA gene	Chr7:19041602-19041850 (-)
JF1/MsJ	ENSUMUG00000057298	lncRNA gene	Chr7:26776271-26776520 (-)
LP/J	ENSMUSG00230053893	lncRNA gene	Chr7:27531544-27531796 (-)
NOD/ShiLtJ	ENSMUSG00190052904	lncRNA gene	Chr7:18695292-18695544 (-)
NZO/HlLtJ	ENSMUSG00225027622	lncRNA gene	Chr7:26374667-26374919 (-)
PWK/PhJ	ENSLUMG00010051686	lncRNA gene	Chr7:18732416-18732665 (-)
SPRET/EiJ	ENSMSPG00010051698	lncRNA gene	Chr7:18085576-18085821 (-)
WSB/EiJ	ENSIUOG00005053714	lncRNA gene	Chr7:12964968-12965219 (-)

Homology

• Gene Tree
  Gm57249
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121222 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121222	Ensembl Gene Model | MGI Sequence Detail	1328	C57BL/6J
transcript	ENSMUST00000247502	Ensembl | MGI Sequence Detail	652	Not Applicable

Other
Accession IDs

MGI:5753278

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:85000 Mouse Genome Informatics Scientific Curators, MGI Sequence Curation Reference. 2003;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57249:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71581	Chr7:28509919-28509947 (-)	121 bp
Tssr71580	Chr7:28509626-28509663 (-)	409 bp