Gm57248 Gene Detail

Summary

• Symbol
  Gm57248
• Name
  predicted gene, 57248

• Feature Type
  lncRNA gene
• IDs
  MGI:7338409
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:30702362-30702712 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338409	lncRNA gene	Chr7:30702362-30702712 (+)
129S1/SvImJ	ENSMUSG00200025000	lncRNA gene	Chr7:20471385-20471735 (+)
A/J	ENSMUSG00195050295	lncRNA gene	Chr7:23147417-23147767 (+)
AKR/J	ENSMUSG00220053927	lncRNA gene	Chr7:21330191-21330541 (-)
BALB/cJ	ENSMUSG00180022504	lncRNA gene	Chr7:21206901-21207251 (+)
C3H/HeJ	ENSMUSG00175043035	lncRNA gene	Chr7:22291459-22291809 (+)
C57BL/6NJ	ENSMUSG00215026741	lncRNA gene	Chr7:20393664-20394014 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049949	lncRNA gene	Chr7:22179441-22179791 (+)
CBA/J	ENSMUSG00210026962	lncRNA gene	Chr7:21454069-21454419 (+)
DBA/2J	ENSMUSG00185054913	lncRNA gene	Chr7:24529530-24529880 (+)
FVB/NJ	ENSMUSG00205019510	lncRNA gene	Chr7:21203547-21203897 (+)
JF1/MsJ	ENSUMUG00000057707	lncRNA gene	Chr7:28970978-28971328 (+)
LP/J	ENSMUSG00230053967	lncRNA gene	Chr7:29704507-29704857 (+)
NOD/ShiLtJ	ENSMUSG00190009264	lncRNA gene	Chr7:20871720-20872070 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010022839	lncRNA gene	Chr7:20898535-20898885 (+)
SPRET/EiJ	ENSMSPG00010051743	lncRNA gene	Chr7:20271641-20272044 (+)
WSB/EiJ	ENSIUOG00005053643	lncRNA gene	Chr7:15149203-15149553 (+)

Homology

• Gene Tree
  Gm57248
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000121221 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121221	Ensembl Gene Model | MGI Sequence Detail	351	C57BL/6J
transcript	ENSMUST00000247501	Ensembl | MGI Sequence Detail	351	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57248:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65828	Chr7:30702349-30702367 (+)	-4 bp