Gm57247 Gene Detail

Summary

• Symbol
  Gm57247
• Name
  predicted gene, 57247

• Feature Type
  lncRNA gene
• IDs
  MGI:7338407
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:130133041-130133173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338407	lncRNA gene	Chr7:130133041-130133173 (+)
129S1/SvImJ	ENSMUSG00200027969	lncRNA gene	Chr7:116663645-116663777 (+)
129S1/SvImJ	ENSMUSG00200028712	lncRNA gene	Chr15:32435182-32435313 (-)
129S1/SvImJ	ENSMUSG00200048380	lncRNA gene	Chr1:162984992-162985119 (-)
A/J	ENSMUSG00195049896	lncRNA gene	Chr1:162293576-162293703 (-)
A/J	ENSMUSG00195045612	lncRNA gene	Chr7:121144621-121144753 (+)
AKR/J	ENSMUSG00220014841	lncRNA gene	Chr1:162082133-162082260 (-)
AKR/J	ENSMUSG00220016752	lncRNA gene	Chr7:114605467-114605599 (+)
BALB/cJ	ENSMUSG00180014019	lncRNA gene	Chr7:117846255-117846387 (+)
BALB/cJ	ENSMUSG00180042393	lncRNA gene	Chr1:162539001-162539128 (-)
C3H/HeJ	ENSMUSG00175019632	lncRNA gene	Chr7:118572833-118572965 (+)
C3H/HeJ	ENSMUSG00175048679	lncRNA gene	Chr1:162634756-162634883 (-)
C57BL/6NJ	ENSMUSG00215038449	lncRNA gene	Chr7:117845336-117845468 (+)
C57BL/6NJ	ENSMUSG00215042253	lncRNA gene	Chr1:162420656-162420783 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036070	lncRNA gene	Chr8:104448029-104448160 (+)
CAST/EiJ	ENSTCUG00005049701	lncRNA gene	Chr7:121087011-121087143 (+)
CBA/J	ENSMUSG00210021851	lncRNA gene	Chr1:162509232-162509359 (-)
CBA/J	ENSMUSG00210023465	lncRNA gene	Chr7:118327593-118327725 (+)
DBA/2J	ENSMUSG00185024286	lncRNA gene	Chr7:122640562-122640694 (+)
FVB/NJ	ENSMUSG00205041729	lncRNA gene	Chr7:118281315-118281447 (+)
FVB/NJ	ENSMUSG00205013385	lncRNA gene	Chr1:161548866-161548993 (-)
JF1/MsJ	ENSUMUG00000051465	lncRNA gene	Chr7:127667393-127667482 (+)
LP/J	ENSMUSG00230027741	lncRNA gene	Chr1:166374075-166374202 (-)
LP/J	ENSMUSG00230053239	lncRNA gene	Chr7:128762119-128762251 (+)
LP/J	ENSMUSG00230013399	lncRNA gene	Chr15:35816548-35816679 (-)
NOD/ShiLtJ	ENSMUSG00190020064	lncRNA gene	Chr7:118470798-118470930 (+)
NOD/ShiLtJ	ENSMUSG00190045843	lncRNA gene	Chr1:162341016-162341143 (-)
NOD/ShiLtJ	ENSMUSG00190034827	lncRNA gene	Chr15:32396985-32397116 (-)
NZO/HlLtJ	ENSMUSG00225005914	lncRNA gene	Chr1:169959878-169960005 (-)
NZO/HlLtJ	ENSMUSG00225013199	lncRNA gene	Chr7:126986016-126986148 (+)
PWK/PhJ	ENSLUMG00010044294	lncRNA gene	Chr7:116846757-116846846 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005017011	lncRNA gene	Chr1:161821670-161821797 (-)
WSB/EiJ	ENSIUOG00005033946	lncRNA gene	Chr7:119188914-119189046 (+)

Homology

• Gene Tree
  Gm57247
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000121219 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121219	Ensembl Gene Model | MGI Sequence Detail	133	C57BL/6J
transcript	ENSMUST00000247495	Ensembl | MGI Sequence Detail	133	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57247:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69470	Chr7:130133038-130133043 (+)	0 bp