Gm57245 Gene Detail

Summary

• Symbol
  Gm57245
• Name
  predicted gene, 57245

• Feature Type
  lncRNA gene
• IDs
  MGI:7338403
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:140752484-140753207 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338403	lncRNA gene	Chr7:140752484-140753207 (+)
129S1/SvImJ	ENSMUSG00200048149	lncRNA gene	Chr7:127317643-127318358 (+)
A/J	ENSMUSG00195042925	lncRNA gene	Chr7:131800079-131800794 (+)
AKR/J	ENSMUSG00220035560	lncRNA gene	Chr7:125281837-125282552 (+)
BALB/cJ	ENSMUSG00180043229	lncRNA gene	Chr7:128492274-128492989 (+)
C3H/HeJ	ENSMUSG00175042647	lncRNA gene	Chr7:129220540-129221255 (+)
C57BL/6NJ	ENSMUSG00215047242	lncRNA gene	Chr7:128487113-128487828 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051804	lncRNA gene	Chr7:131794413-131795127 (+)
CBA/J	ENSMUSG00210031602	lncRNA gene	Chr7:128978563-128979278 (+)
DBA/2J	ENSMUSG00185017539	lncRNA gene	Chr7:133257091-133257806 (+)
FVB/NJ	ENSMUSG00205046854	lncRNA gene	Chr7:128899376-128900091 (+)
JF1/MsJ	ENSUMUG00000050657	lncRNA gene	Chr7:138336304-138337018 (+)
LP/J	ENSMUSG00230042876	lncRNA gene	Chr7:139420578-139421293 (+)
NOD/ShiLtJ	ENSMUSG00190031432	lncRNA gene	Chr7:129085986-129086701 (+)
NZO/HlLtJ	ENSMUSG00225052127	lncRNA gene	Chr7:137629799-137630514 (+)
PWK/PhJ	ENSLUMG00010049121	lncRNA gene	Chr7:127467887-127468601 (+)
SPRET/EiJ	ENSMSPG00010043786	lncRNA gene	Chr7:128910156-128911023 (+)
WSB/EiJ	ENSIUOG00005036324	lncRNA gene	Chr7:129819363-129820078 (+)

Homology

• Gene Tree
  Gm57245
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120837 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120837	Ensembl Gene Model | MGI Sequence Detail	724	C57BL/6J
transcript	ENSMUST00000246038	Ensembl | MGI Sequence Detail	724	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57245:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69925	Chr7:140752513-140752557 (+)	51 bp
Tssr69926	Chr7:140752579-140752590 (+)	101 bp