Gm57244 Gene Detail

Summary

• Symbol
  Gm57244
• Name
  predicted gene, 57244

• Feature Type
  lncRNA gene
• IDs
  MGI:7338401
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:28049288-28050102 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338401	lncRNA gene	Chr7:28049288-28050102 (-)
129S1/SvImJ	ENSMUSG00200047196	lncRNA gene	Chr7:17835402-17835808 (-)
A/J	ENSMUSG00195051535	lncRNA gene	Chr7:20508609-20509015 (-)
AKR/J	ENSMUSG00220053799	lncRNA gene	Chr7:23976908-23977314 (+)
BALB/cJ	ENSMUSG00180054171	lncRNA gene	Chr7:18568147-18568553 (-)
C3H/HeJ	ENSMUSG00175052770	lncRNA gene	Chr7:19603769-19604175 (-)
C57BL/6NJ	ENSMUSG00215054905	lncRNA gene	Chr7:17739407-17739813 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053008	lncRNA gene	Chr7:19525906-19526312 (-)
CBA/J	ENSMUSG00210053365	lncRNA gene	Chr7:18788367-18788773 (-)
DBA/2J	ENSMUSG00185054363	lncRNA gene	Chr7:21901076-21901482 (-)
FVB/NJ	ENSMUSG00205052254	lncRNA gene	Chr7:18573682-18574088 (-)
JF1/MsJ	ENSUMUG00000057879	lncRNA gene	Chr7:26302678-26303084 (-)
LP/J	ENSMUSG00230053887	lncRNA gene	Chr7:27071609-27072015 (-)
NOD/ShiLtJ	ENSMUSG00190053219	lncRNA gene	Chr7:18235369-18235775 (-)
NZO/HlLtJ	ENSMUSG00225027615	lncRNA gene	Chr7:25914737-25915143 (-)
PWK/PhJ	ENSLUMG00010052028	lncRNA gene	Chr7:18266542-18266948 (-)
SPRET/EiJ	ENSMSPG00010051499	lncRNA gene	Chr7:17626426-17626832 (-)
WSB/EiJ	ENSIUOG00005053722	lncRNA gene	Chr7:12495730-12496136 (-)

Homology

• Gene Tree
  Gm57244
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121210 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121210	Ensembl Gene Model | MGI Sequence Detail	815	C57BL/6J
transcript	ENSMUST00000247458	Ensembl | MGI Sequence Detail	814	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57244:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71478	Chr7:28049951-28049988 (-)	132 bp
Tssr71477	Chr7:28049890-28049901 (-)	206 bp