Gm57243 Gene Detail

Summary

• Symbol
  Gm57243
• Name
  predicted gene, 57243

• Feature Type
  lncRNA gene
• IDs
  MGI:7338399
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr7:4152071-4153396 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338399	lncRNA gene	Chr7:4152071-4153396 (+)
129S1/SvImJ	ENSMUSG00200041542	lncRNA gene	Chr7:912259-913325 (+)
A/J	ENSMUSG00195052089	lncRNA gene	Chr7:863641-864707 (+)
AKR/J	ENSMUSG00220032489	lncRNA gene	Chr7:3230313-3231379 (-)
BALB/cJ	ENSMUSG00180051541	lncRNA gene	Chr7:830906-831972 (+)
C3H/HeJ	ENSMUSG00175050863	lncRNA gene	Chr7:823247-824313 (+)
C57BL/6NJ	ENSMUSG00215044999	lncRNA gene	Chr7:869851-870917 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031370	lncRNA gene	Chr7:1069506-1070575 (+)
CBA/J	ENSMUSG00210049177	lncRNA gene	Chr7:823197-824263 (+)
DBA/2J	ENSMUSG00185047594	lncRNA gene	Chr7:1008669-1009735 (+)
FVB/NJ	ENSMUSG00205046066	lncRNA gene	Chr7:850176-851242 (+)
JF1/MsJ	ENSUMUG00000054087	lncRNA gene	Chr7:1108552-1109620 (+)
LP/J	ENSMUSG00230040478	lncRNA gene	Chr7:4030462-4031528 (+)
NOD/ShiLtJ	ENSMUSG00190052590	lncRNA gene	Chr7:895126-896192 (+)
NZO/HlLtJ	ENSMUSG00225021829	lncRNA gene	Chr7:1943144-1944210 (+)
PWK/PhJ	ENSLUMG00010051721	lncRNA gene	Chr7:4596992-4598060 (+)
SPRET/EiJ	ENSMSPG00010048786	lncRNA gene	Chr7:1078593-1079610 (+)
WSB/EiJ	ENSIUOG00005052611	lncRNA gene	Chr7:835801-836867 (+)

Homology

• Gene Tree
  Gm57243
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120885 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120885	Ensembl Gene Model | MGI Sequence Detail	1326	C57BL/6J
transcript	ENSMUST00000246281	Ensembl | MGI Sequence Detail	1326	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57243:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64316	Chr7:4150191-4150204 (+)	-1,873 bp
Tssr64317	Chr7:4150323-4150339 (+)	-1,740 bp
Tssr64318	Chr7:4150676-4150759 (+)	-1,353 bp
Tssr64319	Chr7:4150799-4150825 (+)	-1,259 bp
Tssr64320	Chr7:4150837-4150861 (+)	-1,222 bp
Tssr64321	Chr7:4150866-4150878 (+)	-1,199 bp
Tssr64322	Chr7:4152321-4152356 (+)	268 bp