Gm57242 Gene Detail

Summary

• Symbol
  Gm57242
• Name
  predicted gene, 57242

• Feature Type
  lncRNA gene
• IDs
  MGI:7338397
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:66681700-66694074 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  500 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338397	lncRNA gene	Chr7:66681700-66694074 (-)
129S1/SvImJ	ENSMUSG00200012237	lncRNA gene	Chr7:53391021-53403400 (-)
A/J	ENSMUSG00195014020	lncRNA gene	Chr7:57814230-57826611 (-)
AKR/J	ENSMUSG00220020658	lncRNA gene	Chr7:51316273-51328661 (-)
BALB/cJ	ENSMUSG00180004863	lncRNA gene	Chr7:54525418-54537799 (-)
C3H/HeJ	ENSMUSG00175010895	lncRNA gene	Chr7:55318033-55330412 (-)
C57BL/6NJ	ENSMUSG00215027275	lncRNA gene	Chr7:54458087-54470465 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012239	lncRNA gene	Chr7:58004324-58017341 (-)
CBA/J	ENSMUSG00210019882	lncRNA gene	Chr7:55156506-55168889 (-)
DBA/2J	ENSMUSG00185006171	lncRNA gene	Chr7:59494362-59509064 (-)
FVB/NJ	ENSMUSG00205004611	lncRNA gene	Chr7:55164344-55179258 (-)
JF1/MsJ	ENSUMUG00000012095	lncRNA gene	Chr7:64240764-64255490 (-)
LP/J	ENSMUSG00230020888	lncRNA gene	Chr7:65581145-65593531 (-)
NOD/ShiLtJ	ENSMUSG00190007278	lncRNA gene	Chr7:55264746-55277128 (-)
NZO/HlLtJ	ENSMUSG00225016651	lncRNA gene	Chr7:63856239-63868618 (-)
PWK/PhJ	ENSLUMG00010019503	lncRNA gene	Chr7:53784628-53798040 (-)
SPRET/EiJ	ENSMSPG00010003646	lncRNA gene	Chr7:54158328-54171442 (-)
WSB/EiJ	ENSIUOG00005005385	lncRNA gene	Chr7:55730596-55743088 (-)

Homology

• Gene Tree
  Gm57242
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121207 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121207	Ensembl Gene Model | MGI Sequence Detail	12375	C57BL/6J
transcript	ENSMUST00000247453	Ensembl | MGI Sequence Detail	1771	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57242:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72831	Chr7:66694082-66694092 (-)	-13 bp
Tssr72830	Chr7:66694055-66694079 (-)	7 bp