Gm57241 Gene Detail

Summary

• Symbol
  Gm57241
• Name
  predicted gene, 57241

• Feature Type
  lncRNA gene
• IDs
  MGI:7338395
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:30437273-30437922 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338395	lncRNA gene	Chr7:30437273-30437922 (+)
129S1/SvImJ	ENSMUSG00200025521	lncRNA gene	Chr7:20206093-20206738 (+)
A/J	ENSMUSG00195049348	lncRNA gene	Chr7:22882359-22883005 (+)
AKR/J	ENSMUSG00220053682	lncRNA gene	Chr7:21595486-21596125 (-)
BALB/cJ	ENSMUSG00180021858	lncRNA gene	Chr7:20941825-20942470 (+)
C3H/HeJ	ENSMUSG00175044050	lncRNA gene	Chr7:22026302-22026951 (+)
C57BL/6NJ	ENSMUSG00215029459	lncRNA gene	Chr7:20128452-20129101 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049164	lncRNA gene	Chr7:21918942-21919587 (+)
CBA/J	ENSMUSG00210026954	lncRNA gene	Chr7:21188930-21189579 (+)
DBA/2J	ENSMUSG00185054564	lncRNA gene	Chr7:24267923-24268548 (+)
FVB/NJ	ENSMUSG00205020873	lncRNA gene	Chr7:20938271-20938920 (+)
JF1/MsJ	ENSUMUG00000057889	lncRNA gene	Chr7:28713597-28714222 (+)
LP/J	ENSMUSG00230053966	lncRNA gene	Chr7:29438151-29438800 (+)
NOD/ShiLtJ	ENSMUSG00190008720	lncRNA gene	Chr7:20606715-20607360 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024027	lncRNA gene	Chr7:20645791-20646416 (+)
SPRET/EiJ	ENSMSPG00010051423	lncRNA gene	Chr7:20005349-20006003 (+)
WSB/EiJ	ENSIUOG00005053801	lncRNA gene	Chr7:14890349-14890998 (+)

Homology

• Gene Tree
  Gm57241
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120950 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120950	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	ENSMUST00000246627	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57241:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65806	Chr7:30437311-30437338 (+)	52 bp
Tssr65807	Chr7:30437384-30437413 (+)	126 bp