Gm57235 Gene Detail

Summary

• Symbol
  Gm57235
• Name
  predicted gene, 57235

• Feature Type
  lncRNA gene
• IDs
  MGI:7338383
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:18960709-18962576 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338383	lncRNA gene	Chr7:18960709-18962576 (-)
129S1/SvImJ	ENSMUSG00200045170	lncRNA gene	Chr7:12154030-12154395 (-)
A/J	ENSMUSG00195053302	lncRNA gene	Chr7:12597728-12598093 (-)
AKR/J	ENSMUSG00220028513	lncRNA gene	Chr7:10930528-10930893 (-)
BALB/cJ	ENSMUSG00180053938	lncRNA gene	Chr7:12454072-12454437 (-)
C3H/HeJ	ENSMUSG00175053281	lncRNA gene	Chr7:13036621-13036986 (-)
C57BL/6NJ	ENSMUSG00215054868	lncRNA gene	Chr7:11248977-11249342 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052665	lncRNA gene	Chr7:13062397-13062762 (-)
CBA/J	ENSMUSG00210053681	lncRNA gene	Chr7:12263309-12263674 (-)
DBA/2J	ENSMUSG00185055974	lncRNA gene	Chr7:15706836-15707201 (-)
FVB/NJ	ENSMUSG00205051449	lncRNA gene	Chr7:12649876-12650241 (-)
JF1/MsJ	ENSUMUG00000040070	lncRNA gene	Chr7:19021870-19022235 (-)
LP/J	ENSMUSG00230048784	lncRNA gene	Chr7:19995806-19996171 (-)
NOD/ShiLtJ	ENSMUSG00190052492	lncRNA gene	Chr7:8919517-8919882 (-)
NZO/HlLtJ	ENSMUSG00225054181	lncRNA gene	Chr7:17293515-17293880 (-)
PWK/PhJ	ENSLUMG00010051571	lncRNA gene	Chr7:1868700-1869065 (-)
SPRET/EiJ	ENSMSPG00010051845	lncRNA gene	Chr7:11995825-11996193 (-)
WSB/EiJ	ENSIUOG00005053663	lncRNA gene	Chr7:19613223-19613588 (+)

Homology

• Gene Tree
  Gm57235
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120985 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120985	Ensembl Gene Model | MGI Sequence Detail	1868	C57BL/6J
transcript	ENSMUST00000246774	Ensembl | MGI Sequence Detail	1868	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57235:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70877	Chr7:18961906-18961923 (-)	661 bp
Tssr70876	Chr7:18961728-18961741 (-)	841 bp