Gm57227 Gene Detail

Summary

• Symbol
  Gm57227
• Name
  predicted gene, 57227

• Feature Type
  lncRNA gene
• IDs
  MGI:7338367
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:30349789-30352565 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338367	lncRNA gene	Chr7:30349789-30352565 (+)
129S1/SvImJ	ENSMUSG00200026673	lncRNA gene	Chr7:20130135-20130310 (+)
A/J	ENSMUSG00195050610	lncRNA gene	Chr7:22798779-22798954 (+)
AKR/J	ENSMUSG00220053617	lncRNA gene	Chr7:21682304-21682479 (-)
BALB/cJ	ENSMUSG00180020507	lncRNA gene	Chr7:20858267-20858442 (+)
C3H/HeJ	ENSMUSG00175038818	lncRNA gene	Chr7:21938844-21939019 (+)
C57BL/6NJ	ENSMUSG00215022323	lncRNA gene	Chr7:20040973-20041148 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049194	lncRNA gene	Chr7:21841020-21841195 (+)
CBA/J	ENSMUSG00210026997	lncRNA gene	Chr7:21101459-21101634 (+)
DBA/2J	ENSMUSG00185053924	lncRNA gene	Chr7:24190272-24190447 (+)
FVB/NJ	ENSMUSG00205019769	lncRNA gene	Chr7:20850802-20850977 (+)
JF1/MsJ	ENSUMUG00000057833	lncRNA gene	Chr7:28635912-28636087 (+)
LP/J	ENSMUSG00230054026	lncRNA gene	Chr7:29360713-29360888 (+)
NOD/ShiLtJ	ENSMUSG00190008667	lncRNA gene	Chr7:20523141-20523316 (+)
NZO/HlLtJ	ENSMUSG00225027721	lncRNA gene	Chr7:28201198-28201373 (+)
PWK/PhJ	ENSLUMG00010022168	lncRNA gene	Chr7:20567475-20567650 (+)
SPRET/EiJ	ENSMSPG00010051746	lncRNA gene	Chr7:19928775-19928950 (+)
WSB/EiJ	ENSIUOG00005053690	lncRNA gene	Chr7:14811775-14811950 (+)

Homology

• Gene Tree
  Gm57227
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120870 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120870	Ensembl Gene Model | MGI Sequence Detail	2777	C57BL/6J
transcript	ENSMUST00000258331	Ensembl | MGI Sequence Detail	1432	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57227:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65795	Chr7:30349836-30349864 (+)	61 bp