Gm57223 Gene Detail

Summary

• Symbol
  Gm57223
• Name
  predicted gene, 57223

• Feature Type
  lncRNA gene
• IDs
  MGI:7338359
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:60660014-60722620 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338359	lncRNA gene	Chr7:60660014-60722620 (-)
129S1/SvImJ	ENSMUSG00200009208	lncRNA gene	Chr7:47357550-47436657 (-)
A/J	ENSMUSG00195013834	lncRNA gene	Chr7:51815030-51857789 (-)
AKR/J	ENSMUSG00220011423	lncRNA gene	Chr7:45322223-45371605 (-)
BALB/cJ	ENSMUSG00180011197	lncRNA gene	Chr7:48509223-48558597 (-)
C3H/HeJ	ENSMUSG00175003453	lncRNA gene	Chr7:49270997-49320378 (-)
C57BL/6NJ	ENSMUSG00215001980	lncRNA gene	Chr7:48452103-48494859 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012308	lncRNA gene	Chr7:52076001-52118585 (-)
CBA/J	ENSMUSG00210017532	lncRNA gene	Chr7:49172679-49222049 (-)
DBA/2J	ENSMUSG00185006348	lncRNA gene	Chr7:53597966-53638984 (-)
FVB/NJ	ENSMUSG00205001681	lncRNA gene	Chr7:49138175-49180907 (-)
JF1/MsJ	ENSUMUG00000014447	lncRNA gene	Chr7:58314619-58355653 (-)
LP/J	ENSMUSG00230006002	lncRNA gene	Chr7:59512960-59562308 (-)
NOD/ShiLtJ	ENSMUSG00190003755	lncRNA gene	Chr7:49280378-49329710 (-)
NZO/HlLtJ	ENSMUSG00225010311	lncRNA gene	Chr7:57825566-57868311 (-)
PWK/PhJ	ENSLUMG00010002281	lncRNA gene	Chr7:47885089-47925524 (-)
SPRET/EiJ	ENSMSPG00010001509	lncRNA gene	Chr7:48110481-48162432 (-)
WSB/EiJ	ENSIUOG00005005686	lncRNA gene	Chr7:49682558-49725260 (-)

Homology

• Gene Tree
  Gm57223
  

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000120237 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120237	Ensembl Gene Model | MGI Sequence Detail	62607	C57BL/6J
transcript	ENSMUST00000377596	Ensembl | MGI Sequence Detail	3524	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57223:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72716	Chr7:60705152-60705166 (-)	17,461 bp