Gm57221 Gene Detail

Summary

• Symbol
  Gm57221
• Name
  predicted gene, 57221

• Feature Type
  lncRNA gene
• IDs
  MGI:7338355
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:28072402-28072788 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338355	lncRNA gene	Chr7:28072402-28072788 (+)
129S1/SvImJ	ENSMUSG00200047225	lncRNA gene	Chr7:17858223-17858603 (+)
A/J	ENSMUSG00195051554	lncRNA gene	Chr7:20531422-20531808 (+)
AKR/J	ENSMUSG00220053806	lncRNA gene	Chr7:23954121-23954507 (-)
BALB/cJ	ENSMUSG00180054180	lncRNA gene	Chr7:18590961-18591347 (+)
C3H/HeJ	ENSMUSG00175052781	lncRNA gene	Chr7:19626593-19626973 (+)
C57BL/6NJ	ENSMUSG00215054908	lncRNA gene	Chr7:17762211-17762597 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053007	lncRNA gene	Chr7:19548456-19548841 (+)
CBA/J	ENSMUSG00210053376	lncRNA gene	Chr7:18811191-18811571 (+)
DBA/2J	ENSMUSG00185054386	lncRNA gene	Chr7:21923881-21924267 (+)
FVB/NJ	ENSMUSG00205052278	lncRNA gene	Chr7:18596661-18597041 (+)
JF1/MsJ	ENSUMUG00000057877	lncRNA gene	Chr7:26325244-26325629 (+)
LP/J	ENSMUSG00230053894	lncRNA gene	Chr7:27094414-27094800 (+)
NOD/ShiLtJ	ENSMUSG00190053234	lncRNA gene	Chr7:18258175-18258561 (+)
NZO/HlLtJ	ENSMUSG00225027623	lncRNA gene	Chr7:25937543-25937929 (+)
PWK/PhJ	ENSLUMG00010052021	lncRNA gene	Chr7:18289152-18289543 (+)
SPRET/EiJ	ENSMSPG00010051494	lncRNA gene	Chr7:17648806-17649185 (+)
WSB/EiJ	ENSIUOG00005053725	lncRNA gene	Chr7:12518560-12518940 (+)

Homology

• Gene Tree
  Gm57221
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121047 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121047	Ensembl Gene Model | MGI Sequence Detail	387	C57BL/6J
transcript	ENSMUST00000246980	Ensembl | MGI Sequence Detail	387	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57221:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65459	Chr7:28072355-28072396 (+)	-26 bp