Gm57218 Gene Detail

Summary

• Symbol
  Gm57218
• Name
  predicted gene, 57218

• Feature Type
  lncRNA gene
• IDs
  MGI:7338349
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:44502687-44504232 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338349	lncRNA gene	Chr7:44502687-44504232 (-)
129S1/SvImJ	ENSMUSG00200033899	lncRNA gene	Chr7:32098665-32099616 (-)
A/J	ENSMUSG00195050372	lncRNA gene	Chr7:36126732-36127684 (-)
AKR/J	ENSMUSG00220009027	lncRNA gene	Chr7:30431708-30432659 (-)
BALB/cJ	ENSMUSG00180044329	lncRNA gene	Chr7:33002125-33003076 (-)
C3H/HeJ	ENSMUSG00175040066	lncRNA gene	Chr7:33534595-33535546 (-)
C57BL/6NJ	ENSMUSG00215047246	lncRNA gene	Chr7:32795765-32796716 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049335	lncRNA gene	Chr7:36511922-36512882 (-)
CBA/J	ENSMUSG00210049690	lncRNA gene	Chr7:33905960-33906911 (-)
DBA/2J	ENSMUSG00185049295	lncRNA gene	Chr7:37778591-37779542 (-)
FVB/NJ	ENSMUSG00205047728	lncRNA gene	Chr7:33451303-33452254 (-)
JF1/MsJ	ENSUMUG00000054506	lncRNA gene	Chr7:42266757-42267714 (-)
LP/J	ENSMUSG00230051909	lncRNA gene	Chr7:43207917-43208869 (-)
NOD/ShiLtJ	ENSMUSG00190052452	lncRNA gene	Chr7:33779064-33780015 (-)
NZO/HlLtJ	ENSMUSG00225019231	lncRNA gene	Chr7:41416502-41417454 (-)
PWK/PhJ	ENSLUMG00010051099	lncRNA gene	Chr7:32735252-32736211 (-)
SPRET/EiJ	ENSMSPG00010045968	lncRNA gene	Chr7:32511403-32512350 (-)
WSB/EiJ	ENSIUOG00005032271	lncRNA gene	Chr7:34322473-34323424 (-)

Homology

• Gene Tree
  Gm57218
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120971 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120971	Ensembl Gene Model | MGI Sequence Detail	1546	C57BL/6J
transcript	ENSMUST00000246718	Ensembl | MGI Sequence Detail	1546	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57218:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72238	Chr7:44503952-44503972 (-)	270 bp