Gm57217 Gene Detail

Summary

• Symbol
  Gm57217
• Name
  predicted gene, 57217

• Feature Type
  lncRNA gene
• IDs
  MGI:7338347
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:5022114-5023516 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338347	lncRNA gene	Chr7:5022114-5023516 (-)
129S1/SvImJ	ENSMUSG00200041338	lncRNA gene	Chr7:1752729-1754125 (-)
A/J	ENSMUSG00195052369	lncRNA gene	Chr7:1743561-1744956 (-)
AKR/J	ENSMUSG00220026941	lncRNA gene	Chr7:2350274-2351669 (+)
BALB/cJ	ENSMUSG00180049954	lncRNA gene	Chr7:1698770-1700165 (-)
C3H/HeJ	ENSMUSG00175049023	lncRNA gene	Chr7:1706461-1707856 (-)
C57BL/6NJ	ENSMUSG00215043801	lncRNA gene	Chr7:1744939-1746341 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028668	lncRNA gene	Chr7:1916348-1917769 (-)
CBA/J	ENSMUSG00210047357	lncRNA gene	Chr7:1704915-1706310 (-)
DBA/2J	ENSMUSG00185046309	lncRNA gene	Chr7:1887370-1888765 (-)
FVB/NJ	ENSMUSG00205047273	lncRNA gene	Chr7:1685539-1686934 (-)
JF1/MsJ	ENSUMUG00000051563	lncRNA gene	Chr7:1954361-1955771 (-)
LP/J	ENSMUSG00230041230	lncRNA gene	Chr7:4898184-4899579 (-)
NOD/ShiLtJ	ENSMUSG00190050011	lncRNA gene	Chr7:1777354-1778749 (-)
NZO/HlLtJ	ENSMUSG00225021343	lncRNA gene	Chr7:2811173-2812570 (-)
PWK/PhJ	ENSLUMG00010049439	lncRNA gene	Chr7:5466713-5468119 (-)
SPRET/EiJ	ENSMSPG00010048516	lncRNA gene	Chr7:1877178-1878593 (-)
WSB/EiJ	ENSIUOG00005053123	lncRNA gene	Chr7:1705338-1706744 (-)

Homology

• Gene Tree
  Gm57217
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120872 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120872	Ensembl Gene Model | MGI Sequence Detail	1403	C57BL/6J
transcript	ENSMUST00000246219	Ensembl | MGI Sequence Detail	1403	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57217:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70573	Chr7:5023501-5023515 (-)	8 bp