Gm57216 Gene Detail

Summary

• Symbol
  Gm57216
• Name
  predicted gene, 57216

• Feature Type
  lncRNA gene
• IDs
  MGI:7338345
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:18480184-18480602 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338345	lncRNA gene	Chr7:18480184-18480602 (-)
129S1/SvImJ	ENSMUSG00200046512	lncRNA gene	Chr7:11615236-11615649 (-)
A/J	ENSMUSG00195053327	lncRNA gene	Chr7:12118735-12119148 (-)
AKR/J	ENSMUSG00220033701	lncRNA gene	Chr7:10451709-10452122 (-)
BALB/cJ	ENSMUSG00180053734	lncRNA gene	Chr7:11975097-11975510 (-)
C3H/HeJ	ENSMUSG00175053159	lncRNA gene	Chr7:12531377-12531790 (-)
C57BL/6NJ	ENSMUSG00215054798	lncRNA gene	Chr7:11730406-11730819 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052564	lncRNA gene	Chr7:12589905-12590333 (-)
CBA/J	ENSMUSG00210053150	lncRNA gene	Chr7:11758084-11758497 (-)
DBA/2J	ENSMUSG00185054956	lncRNA gene	Chr7:15225488-15225913 (-)
FVB/NJ	ENSMUSG00205051611	lncRNA gene	Chr7:12178249-12178674 (-)
JF1/MsJ	ENSUMUG00000039035	lncRNA gene	Chr7:18515779-18516192 (-)
LP/J	ENSMUSG00230046520	lncRNA gene	Chr7:19490640-19491053 (-)
NOD/ShiLtJ	ENSMUSG00190052337	lncRNA gene	Chr7:8440136-8440561 (-)
NZO/HlLtJ	ENSMUSG00225054238	lncRNA gene	Chr7:16805753-16806166 (-)
PWK/PhJ	ENSLUMG00010050364	lncRNA gene	Chr7:1370129-1370539 (-)
SPRET/EiJ	ENSMSPG00010051776	lncRNA gene	Chr7:11502283-11502702 (-)
WSB/EiJ	ENSIUOG00005009562	lncRNA gene	Chr7:20092167-20092580 (+)

Homology

• Gene Tree
  Gm57216
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120853 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120853	Ensembl Gene Model | MGI Sequence Detail	419	C57BL/6J
transcript	ENSMUST00000246123	Ensembl | MGI Sequence Detail	419	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57216:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70850	Chr7:18480577-18480592 (-)	17 bp