Gm57214 Gene Detail

Summary

• Symbol
  Gm57214
• Name
  predicted gene, 57214

• Feature Type
  lncRNA gene
• IDs
  MGI:7338341
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr7:28079837-28081576 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338341	lncRNA gene	Chr7:28079837-28081576 (-)
129S1/SvImJ	ENSMUSG00200046963	lncRNA gene	Chr7:17865912-17867221 (-)
A/J	ENSMUSG00195051182	lncRNA gene	Chr7:20539107-20540416 (-)
AKR/J	ENSMUSG00220053475	lncRNA gene	Chr7:23945511-23946820 (+)
BALB/cJ	ENSMUSG00180054145	lncRNA gene	Chr7:18598644-18599953 (-)
C3H/HeJ	ENSMUSG00175053123	lncRNA gene	Chr7:19634281-19635590 (-)
C57BL/6NJ	ENSMUSG00215054885	lncRNA gene	Chr7:17769898-17771207 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052870	lncRNA gene	Chr7:19556088-19557410 (-)
CBA/J	ENSMUSG00210053469	lncRNA gene	Chr7:18818878-18820187 (-)
DBA/2J	ENSMUSG00185054857	lncRNA gene	Chr7:21931567-21932876 (-)
FVB/NJ	ENSMUSG00205052184	lncRNA gene	Chr7:18604349-18605658 (-)
JF1/MsJ	ENSUMUG00000057420	lncRNA gene	Chr7:26332907-26334218 (-)
LP/J	ENSMUSG00230053923	lncRNA gene	Chr7:27102101-27103410 (-)
NOD/ShiLtJ	ENSMUSG00190053003	lncRNA gene	Chr7:18265860-18267169 (-)
NZO/HlLtJ	ENSMUSG00225027673	lncRNA gene	Chr7:25945229-25946538 (-)
PWK/PhJ	ENSLUMG00010052063	lncRNA gene	Chr7:18296823-18298133 (-)
SPRET/EiJ	ENSMSPG00010051502	lncRNA gene	Chr7:17656500-17657818 (-)
WSB/EiJ	ENSIUOG00005053666	lncRNA gene	Chr7:12526248-12527557 (-)

Homology

• Gene Tree
  Gm57214
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120054 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120054	Ensembl Gene Model | MGI Sequence Detail	1740	C57BL/6J
transcript	ENSMUST00000241136	Ensembl | MGI Sequence Detail	1740	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57214:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71527	Chr7:28081537-28081570 (-)	22 bp
Tssr71526	Chr7:28081357-28081368 (-)	213 bp
Tssr71525	Chr7:28081349-28081354 (-)	224 bp
Tssr71524	Chr7:28081303-28081324 (-)	262 bp
Tssr71523	Chr7:28080717-28080722 (-)	856 bp
Tssr71522	Chr7:28080493-28080512 (-)	1,073 bp
Tssr71521	Chr7:28080451-28080467 (-)	1,117 bp
Tssr71520	Chr7:28080439-28080446 (-)	1,133 bp
Tssr71519	Chr7:28080395-28080406 (-)	1,175 bp
Tssr71518	Chr7:28080374-28080379 (-)	1,199 bp
Tssr71517	Chr7:28080352-28080361 (-)	1,219 bp