Gm57212 Gene Detail

Summary

• Symbol
  Gm57212
• Name
  predicted gene, 57212

• Feature Type
  lncRNA gene
• IDs
  MGI:7338337
  NCBI Gene: 118567516
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:78532178-78538584 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338337	lncRNA gene	Chr7:78532126-78539264 (+)
129S1/SvImJ	ENSMUSG00200035396	lncRNA gene	Chr7:65352848-65359063 (+)
A/J	ENSMUSG00195014694	lncRNA gene	Chr7:69769871-69776107 (+)
AKR/J	ENSMUSG00220038336	lncRNA gene	Chr7:63311861-63318105 (+)
BALB/cJ	ENSMUSG00180013567	lncRNA gene	Chr7:66494964-66501203 (+)
C3H/HeJ	ENSMUSG00175021872	lncRNA gene	Chr7:67264905-67271120 (+)
C57BL/6NJ	ENSMUSG00215030067	lncRNA gene	Chr7:66356733-66362966 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004222	lncRNA gene	Chr7:69812941-69819120 (+)
CBA/J	ENSMUSG00210024093	lncRNA gene	Chr7:67116229-67122445 (+)
DBA/2J	ENSMUSG00185047150	lncRNA gene	Chr7:71438952-71445168 (+)
FVB/NJ	ENSMUSG00205028188	lncRNA gene	Chr7:66991403-66997635 (+)
JF1/MsJ	ENSUMUG00000033962	lncRNA gene	Chr7:76087028-76093228 (+)
LP/J	ENSMUSG00230015402	lncRNA gene	Chr7:77530764-77537006 (+)
NOD/ShiLtJ	ENSMUSG00190019987	lncRNA gene	Chr7:67259637-67265884 (+)
NZO/HlLtJ	ENSMUSG00225042859	lncRNA gene	Chr7:75765997-75772240 (+)
PWK/PhJ	ENSLUMG00010018149	lncRNA gene	Chr7:65681598-65687791 (+)
SPRET/EiJ	ENSMSPG00010024662	lncRNA gene	Chr7:66100050-66106222 (+)
WSB/EiJ	ENSIUOG00005021635	lncRNA gene	Chr7:67606969-67613195 (+)

Homology

• Gene Tree
  Gm57212
  

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  5

• Ensembl
  ENSMUSG00000120042 (Evidence)
• NCBI Gene
  118567516

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120042	Ensembl Gene Model | MGI Sequence Detail	6407	C57BL/6J
transcript	ENSMUST00000321317	Ensembl | MGI Sequence Detail	1861	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57212:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67305	Chr7:78532367-78532382 (+)	197 bp
Tssr67306	Chr7:78535367-78535399 (+)	3,205 bp