Gm57202 Gene Detail

Summary

• Symbol
  Gm57202
• Name
  predicted gene, 57202

• Feature Type
  lncRNA gene
• IDs
  MGI:7338317
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:4815196-4822371 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  333 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338317	lncRNA gene	Chr7:4815196-4822371 (+)
129S1/SvImJ	ENSMUSG00200041345	lncRNA gene	Chr7:1542693-1543363 (+)
A/J	ENSMUSG00195053096	lncRNA gene	Chr7:1525027-1525697 (+)
AKR/J	ENSMUSG00220027029	lncRNA gene	Chr7:2569565-2570235 (-)
BALB/cJ	ENSMUSG00180051461	lncRNA gene	Chr7:1488703-1489373 (+)
C3H/HeJ	ENSMUSG00175050586	lncRNA gene	Chr7:1487903-1488573 (+)
C57BL/6NJ	ENSMUSG00215046331	lncRNA gene	Chr7:1535918-1536588 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032166	lncRNA gene	Chr7:1702179-1702849 (+)
CBA/J	ENSMUSG00210047897	lncRNA gene	Chr7:1486365-1487035 (+)
DBA/2J	ENSMUSG00185048294	lncRNA gene	Chr7:1668797-1669467 (+)
FVB/NJ	ENSMUSG00205046535	lncRNA gene	Chr7:1466941-1467611 (+)
JF1/MsJ	ENSUMUG00000053669	lncRNA gene	Chr7:1745799-1746469 (+)
LP/J	ENSMUSG00230040436	lncRNA gene	Chr7:4688166-4688836 (+)
NOD/ShiLtJ	ENSMUSG00190050545	lncRNA gene	Chr7:1558809-1559479 (+)
NZO/HlLtJ	ENSMUSG00225021812	lncRNA gene	Chr7:2603092-2603762 (+)
PWK/PhJ	ENSLUMG00010049184	lncRNA gene	Chr7:5258521-5259191 (+)
SPRET/EiJ	ENSMSPG00010048987	lncRNA gene	Chr7:1664346-1664959 (+)
WSB/EiJ	ENSIUOG00005052267	lncRNA gene	Chr7:1496703-1497373 (+)

Homology

• Gene Tree
  Gm57202
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120199 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120199	Ensembl Gene Model | MGI Sequence Detail	7176	C57BL/6J
transcript	ENSMUST00000241844	Ensembl | MGI Sequence Detail	1393	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57202:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64367	Chr7:4815935-4816029 (+)	786 bp