Gm57201 Gene Detail

Summary

• Symbol
  Gm57201
• Name
  predicted gene, 57201

• Feature Type
  lncRNA gene
• IDs
  MGI:7338315
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:110681772-110684213 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338315	lncRNA gene	Chr7:110681772-110684213 (+)
129S1/SvImJ	ENSMUSG00200035081	lncRNA gene	Chr7:97225486-97226876 (+)
A/J	ENSMUSG00195041356	lncRNA gene	Chr7:101728930-101730320 (+)
AKR/J	ENSMUSG00220039788	lncRNA gene	Chr7:95131872-95133262 (+)
BALB/cJ	ENSMUSG00180046618	lncRNA gene	Chr7:98397053-98398443 (+)
C3H/HeJ	ENSMUSG00175052040	lncRNA gene	Chr7:99032923-99034313 (+)
C57BL/6NJ	ENSMUSG00215051770	lncRNA gene	Chr7:98337728-98339118 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044749	lncRNA gene	Chr7:101711406-101712797 (+)
CBA/J	ENSMUSG00210047483	lncRNA gene	Chr7:98859969-98861359 (+)
DBA/2J	ENSMUSG00185022104	lncRNA gene	Chr7:103210100-103211490 (+)
FVB/NJ	ENSMUSG00205048666	lncRNA gene	Chr7:98822376-98823766 (+)
JF1/MsJ	ENSUMUG00000052387	lncRNA gene	Chr7:108223661-108225053 (+)
LP/J	ENSMUSG00230048989	lncRNA gene	Chr7:109311197-109312587 (+)
NOD/ShiLtJ	ENSMUSG00190047489	lncRNA gene	Chr7:99021504-99022894 (+)
NZO/HlLtJ	ENSMUSG00225018684	lncRNA gene	Chr7:107534041-107535430 (+)
PWK/PhJ	ENSLUMG00010043753	lncRNA gene	Chr7:97356712-97358102 (+)
SPRET/EiJ	ENSMSPG00010042084	lncRNA gene	Chr7:98524077-98525469 (+)
WSB/EiJ	ENSIUOG00005050375	lncRNA gene	Chr7:99668346-99669735 (+)

Homology

• Gene Tree
  Gm57201
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120003 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120003	Ensembl Gene Model | MGI Sequence Detail	2442	C57BL/6J
transcript	ENSMUST00000240989	Ensembl | MGI Sequence Detail	2442	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57201:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68539	Chr7:110682381-110682412 (+)	625 bp
Tssr68540	Chr7:110682417-110682434 (+)	654 bp
Tssr68541	Chr7:110682531-110682551 (+)	769 bp