Gm57200 Gene Detail

Summary

• Symbol
  Gm57200
• Name
  predicted gene, 57200

• Feature Type
  lncRNA gene
• IDs
  MGI:7338313
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:19053392-19075283 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  654 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338313	lncRNA gene	Chr7:19053392-19075283 (+)
129S1/SvImJ	ENSMUSG00200046298	lncRNA gene	Chr7:12248413-12249381 (+)
A/J	ENSMUSG00195054120	lncRNA gene	Chr7:12690665-12691389 (+)
AKR/J	ENSMUSG00220028363	lncRNA gene	Chr7:11023361-11024085 (+)
BALB/cJ	ENSMUSG00180053795	lncRNA gene	Chr7:12546996-12547720 (+)
C3H/HeJ	ENSMUSG00175053057	lncRNA gene	Chr7:13130968-13131942 (+)
C57BL/6NJ	ENSMUSG00215055020	lncRNA gene	Chr7:11155754-11156478 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052463	lncRNA gene	Chr7:13156555-13157270 (+)
CBA/J	ENSMUSG00210053645	lncRNA gene	Chr7:12357626-12358591 (+)
DBA/2J	ENSMUSG00185055924	lncRNA gene	Chr7:15800082-15800810 (+)
FVB/NJ	ENSMUSG00205051538	lncRNA gene	Chr7:12742733-12743457 (+)
JF1/MsJ	ENSUMUG00000042403	lncRNA gene	Chr7:19115989-19116735 (+)
LP/J	ENSMUSG00230053719	lncRNA gene	Chr7:20090144-20091112 (+)
NOD/ShiLtJ	ENSMUSG00190052665	lncRNA gene	Chr7:9013833-9014804 (+)
NZO/HlLtJ	ENSMUSG00225054185	lncRNA gene	Chr7:17386383-17387107 (+)
PWK/PhJ	ENSLUMG00010051558	lncRNA gene	Chr7:1962586-1963577 (+)
SPRET/EiJ	ENSMSPG00010051586	lncRNA gene	Chr7:12098437-12099152 (+)
WSB/EiJ	ENSIUOG00005053600	lncRNA gene	Chr7:19519967-19520691 (-)

Homology

• Gene Tree
  Gm57200
  

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000120563 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120563	Ensembl Gene Model | MGI Sequence Detail	21892	C57BL/6J
transcript	ENSMUST00000244190	Ensembl | MGI Sequence Detail	1396	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57200:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64829	Chr7:19052950-19052968 (+)	-433 bp
Tssr64830	Chr7:19054246-19054252 (+)	857 bp