Gm57198 Gene Detail

Summary

• Symbol
  Gm57198
• Name
  predicted gene, 57198

• Feature Type
  lncRNA gene
• IDs
  MGI:7338309
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr7:16133534-16134828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338309	lncRNA gene	Chr7:16133534-16134828 (+)
129S1/SvImJ	ENSMUSG00200042028	lncRNA gene	Chr7:9514509-9515806 (+)
A/J	ENSMUSG00195052570	lncRNA gene	Chr7:9975513-9976807 (+)
AKR/J	ENSMUSG00220032226	lncRNA gene	Chr7:8267960-8269257 (+)
BALB/cJ	ENSMUSG00180051683	lncRNA gene	Chr7:9891339-9892633 (+)
C3H/HeJ	ENSMUSG00175052292	lncRNA gene	Chr7:10379235-10380532 (+)
C57BL/6NJ	ENSMUSG00215045863	lncRNA gene	Chr7:9632245-9633539 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052799	lncRNA gene	Chr7:10377460-10378761 (+)
CBA/J	ENSMUSG00210048779	lncRNA gene	Chr7:9606327-9607624 (+)
DBA/2J	ENSMUSG00185055058	lncRNA gene	Chr7:13121087-13122384 (+)
FVB/NJ	ENSMUSG00205048893	lncRNA gene	Chr7:10008973-10010267 (+)
JF1/MsJ	ENSUMUG00000040596	lncRNA gene	Chr7:16398874-16400171 (+)
LP/J	ENSMUSG00230047298	lncRNA gene	Chr7:17338899-17340196 (+)
NOD/ShiLtJ	ENSMUSG00190051266	lncRNA gene	Chr7:6436250-6437544 (+)
NZO/HlLtJ	ENSMUSG00225054596	lncRNA gene	Chr7:14572926-14574220 (+)
PWK/PhJ	ENSLUMG00010051796	lncRNA gene	Chr7:12695734-12697031 (+)
SPRET/EiJ	ENSMSPG00010049089	lncRNA gene	Chr7:9152079-9153377 (+)
WSB/EiJ	ENSIUOG00005053658	lncRNA gene	Chr7:16100649-16101951 (-)

Homology

• Gene Tree
  Gm57198
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120191 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120191	Ensembl Gene Model | MGI Sequence Detail	1295	C57BL/6J
transcript	ENSMUST00000241816	Ensembl | MGI Sequence Detail	1295	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm57198:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64603	Chr7:16133517-16133554 (+)	2 bp
Tssr64604	Chr7:16133955-16133986 (+)	437 bp
Tssr64605	Chr7:16133990-16134003 (+)	463 bp
Tssr64606	Chr7:16134032-16134043 (+)	504 bp
Tssr64607	Chr7:16134182-16134226 (+)	670 bp
Tssr64608	Chr7:16134229-16134256 (+)	709 bp