Gm57197 Gene Detail

Summary

• Symbol
  Gm57197
• Name
  predicted gene, 57197

• Feature Type
  lncRNA gene
• IDs
  MGI:7338307
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:25454389-25455664 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338307	lncRNA gene	Chr7:25454389-25455664 (-)
129S1/SvImJ	ENSMUSG00200045285	lncRNA gene	Chr7:15452014-15452690 (-)
A/J	ENSMUSG00195053808	lncRNA gene	Chr7:17895939-17896615 (-)
AKR/J	ENSMUSG00220053383	lncRNA gene	Chr7:26493954-26494630 (+)
BALB/cJ	ENSMUSG00180054012	lncRNA gene	Chr7:15967891-15968567 (-)
C3H/HeJ	ENSMUSG00175052757	lncRNA gene	Chr7:17011960-17012636 (-)
C57BL/6NJ	ENSMUSG00215054983	lncRNA gene	Chr7:15371847-15372523 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052950	lncRNA gene	Chr7:17065110-17065783 (-)
CBA/J	ENSMUSG00210053257	lncRNA gene	Chr7:16197674-16198350 (-)
DBA/2J	ENSMUSG00185055963	lncRNA gene	Chr7:19411445-19412121 (-)
FVB/NJ	ENSMUSG00205052469	lncRNA gene	Chr7:16208337-16209013 (-)
JF1/MsJ	ENSUMUG00000057383	lncRNA gene	Chr7:23693887-23694563 (-)
LP/J	ENSMUSG00230053754	lncRNA gene	Chr7:24678139-24678815 (-)
NOD/ShiLtJ	ENSMUSG00190053072	lncRNA gene	Chr7:15671677-15672353 (-)
NZO/HlLtJ	ENSMUSG00225027156	lncRNA gene	Chr7:23353422-23354098 (-)
PWK/PhJ	ENSLUMG00010051536	lncRNA gene	Chr7:15627589-15628265 (-)
SPRET/EiJ	ENSMSPG00010051659	lncRNA gene	Chr7:15300561-15301239 (-)
WSB/EiJ	ENSIUOG00005053638	lncRNA gene	Chr7:10167194-10167870 (-)

Homology

• Gene Tree
  Gm57197
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120217 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120217	Ensembl Gene Model | MGI Sequence Detail	1276	C57BL/6J
transcript	ENSMUST00000241943	Ensembl | MGI Sequence Detail	1276	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57197:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71314	Chr7:25455603-25455623 (-)	51 bp
Tssr71313	Chr7:25455546-25455563 (-)	109 bp
Tssr71312	Chr7:25455503-25455522 (-)	151 bp