Gm57193 Gene Detail

Summary

• Symbol
  Gm57193
• Name
  predicted gene, 57193

• Feature Type
  lncRNA gene
• IDs
  MGI:7338299
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:110238807-110248503 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  325 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338299	lncRNA gene	Chr7:110238807-110248503 (-)
129S1/SvImJ	ENSMUSG00200034990	lncRNA gene	Chr7:96789186-96791018 (-)
A/J	ENSMUSG00195040356	lncRNA gene	Chr7:101284179-101286011 (-)
AKR/J	ENSMUSG00220039313	lncRNA gene	Chr7:94687688-94689520 (-)
BALB/cJ	ENSMUSG00180046771	lncRNA gene	Chr7:97960738-97962570 (-)
C3H/HeJ	ENSMUSG00175051860	lncRNA gene	Chr7:98596623-98598455 (-)
C57BL/6NJ	ENSMUSG00215051568	lncRNA gene	Chr7:97901430-97903262 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044015	lncRNA gene	Chr7:101285097-101286929 (-)
CBA/J	ENSMUSG00210048531	lncRNA gene	Chr7:98423676-98425508 (-)
DBA/2J	ENSMUSG00185022115	lncRNA gene	Chr7:102773811-102775643 (-)
FVB/NJ	ENSMUSG00205049118	lncRNA gene	Chr7:98386044-98387876 (-)
JF1/MsJ	ENSUMUG00000052782	lncRNA gene	Chr7:107794899-107796734 (-)
LP/J	ENSMUSG00230049050	lncRNA gene	Chr7:108874946-108876778 (-)
NOD/ShiLtJ	ENSMUSG00190045846	lncRNA gene	Chr7:98587054-98588884 (-)
NZO/HlLtJ	ENSMUSG00225018891	lncRNA gene	Chr7:107092200-107094032 (-)
PWK/PhJ	ENSLUMG00010043241	lncRNA gene	Chr7:96924620-96926450 (-)
SPRET/EiJ	ENSMSPG00010043361	lncRNA gene	Chr7:98080894-98082724 (-)
WSB/EiJ	ENSIUOG00005050213	lncRNA gene	Chr7:99234344-99236176 (-)

Homology

• Gene Tree
  Gm57193
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000119986 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119986	Ensembl Gene Model | MGI Sequence Detail	9697	C57BL/6J
transcript	ENSMUST00000240944	Ensembl | MGI Sequence Detail	2843	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57193:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74264	Chr7:110248024-110248040 (-)	471 bp
Tssr74263	Chr7:110247973-110247991 (-)	521 bp
Tssr74262	Chr7:110247936-110247945 (-)	562 bp