Gm57188 Gene Detail

Summary

• Symbol
  Gm57188
• Name
  predicted gene, 57188

• Feature Type
  lncRNA gene
• IDs
  MGI:7338289
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:57615778-57618978 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338289	lncRNA gene	Chr1:57615778-57618978 (+)
129S1/SvImJ	ENSMUSG00200018954	lncRNA gene	Chr1:55118712-55121821 (+)
A/J	ENSMUSG00195031861	lncRNA gene	Chr1:54652225-54655333 (+)
AKR/J	ENSMUSG00220041254	lncRNA gene	Chr1:54742341-54745449 (+)
BALB/cJ	ENSMUSG00180014207	lncRNA gene	Chr1:54900093-54903200 (+)
C3H/HeJ	ENSMUSG00175001232	lncRNA gene	Chr1:55029817-55032925 (+)
C57BL/6NJ	ENSMUSG00215037109	lncRNA gene	Chr1:54961556-54964665 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013610	lncRNA gene	Chr1:54821482-54824584 (+)
CBA/J	ENSMUSG00210054099	lncRNA gene	Chr1:54710629-54713737 (+)
DBA/2J	ENSMUSG00185055602	lncRNA gene	Chr1:55830284-55833392 (+)
FVB/NJ	ENSMUSG00205021849	lncRNA gene	Chr1:54675583-54678691 (+)
JF1/MsJ	ENSUMUG00000048671	lncRNA gene	Chr1:54790169-54793272 (+)
LP/J	ENSMUSG00230030597	lncRNA gene	Chr1:55840842-55843950 (+)
NOD/ShiLtJ	ENSMUSG00190041378	lncRNA gene	Chr1:54886153-54889260 (+)
NZO/HlLtJ	ENSMUSG00225009293	lncRNA gene	Chr1:59037548-59040657 (+)
PWK/PhJ	ENSLUMG00010025379	lncRNA gene	Chr1:54330981-54334085 (+)
SPRET/EiJ	ENSMSPG00010027510	lncRNA gene	Chr1:56192125-56195231 (+)
WSB/EiJ	ENSIUOG00005020477	lncRNA gene	Chr1:54504481-54507586 (+)

Homology

• Gene Tree
  Gm57188
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121279	Ensembl Gene Model | MGI Sequence Detail	3201	C57BL/6J
transcript	ENSMUST00000247727	Ensembl | MGI Sequence Detail	732	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57188:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6745	Chr1:57615855-57615856 (+)	78 bp