Gm57187 Gene Detail

Summary

• Symbol
  Gm57187
• Name
  predicted gene, 57187

• Feature Type
  lncRNA gene
• IDs
  MGI:7338287
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:132398004-132398162 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338287	lncRNA gene	Chr1:132398004-132398162 (+)
129S1/SvImJ	ENSMUSG00200009018	lncRNA gene	Chr1:129961701-129961855 (+)
A/J	ENSMUSG00195046241	lncRNA gene	Chr1:129062843-129062997 (+)
AKR/J	ENSMUSG00220050684	lncRNA gene	Chr1:128892929-128893083 (+)
BALB/cJ	ENSMUSG00180038283	lncRNA gene	Chr1:129608978-129609132 (+)
C3H/HeJ	ENSMUSG00175045516	lncRNA gene	Chr1:129307374-129307528 (+)
C57BL/6NJ	ENSMUSG00215045596	lncRNA gene	Chr1:129323096-129323250 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038649	lncRNA gene	Chr1:128229288-128229441 (+)
CBA/J	ENSMUSG00210028565	lncRNA gene	Chr1:129203746-129203900 (+)
DBA/2J	ENSMUSG00185035103	lncRNA gene	Chr1:133560481-133560635 (+)
FVB/NJ	ENSMUSG00205044818	lncRNA gene	Chr1:128540161-128540315 (+)
JF1/MsJ	ENSUMUG00000053500	lncRNA gene	Chr1:132727147-132727300 (+)
LP/J	ENSMUSG00230039391	lncRNA gene	Chr1:133148117-133148271 (+)
NOD/ShiLtJ	ENSMUSG00190045877	lncRNA gene	Chr1:129217367-129217521 (+)
NZO/HlLtJ	ENSMUSG00225021744	lncRNA gene	Chr1:136868332-136868486 (+)
PWK/PhJ	ENSLUMG00010027985	lncRNA gene	Chr1:128337826-128337980 (+)
SPRET/EiJ	ENSMSPG00010046309	lncRNA gene	Chr1:131143183-131143337 (+)
WSB/EiJ	ENSIUOG00005048246	lncRNA gene	Chr1:128954359-128954513 (+)

Homology

• Gene Tree
  Gm57187
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121278 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121278	Ensembl Gene Model | MGI Sequence Detail	159	C57BL/6J
transcript	ENSMUST00000247726	Ensembl | MGI Sequence Detail	159	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57187:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8747	Chr1:132398002-132398013 (+)	4 bp