Gm57186 Gene Detail

Summary

• Symbol
  Gm57186
• Name
  predicted gene, 57186

• Feature Type
  lncRNA gene
• IDs
  MGI:7338285
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:180719664-180722008 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338285	lncRNA gene	Chr1:180719664-180722008 (-)
129S1/SvImJ	ENSMUSG00200024060	lncRNA gene	Chr1:178473554-178475898 (-)
A/J	ENSMUSG00195044419	lncRNA gene	Chr1:178088979-178091331 (-)
AKR/J	ENSMUSG00220021190	lncRNA gene	Chr1:177324941-177327285 (-)
BALB/cJ	ENSMUSG00180037501	lncRNA gene	Chr1:178124781-178127125 (-)
C3H/HeJ	ENSMUSG00175039436	lncRNA gene	Chr1:178300579-178302923 (-)
C57BL/6NJ	ENSMUSG00215029150	lncRNA gene	Chr1:177525229-177527573 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043192	lncRNA gene	Chr1:176050656-176053016 (-)
CBA/J	ENSMUSG00210019470	lncRNA gene	Chr1:177962163-177964507 (-)
DBA/2J	ENSMUSG00185037245	lncRNA gene	Chr1:182581581-182583925 (-)
FVB/NJ	ENSMUSG00205037733	lncRNA gene	Chr1:177020484-177022828 (-)
JF1/MsJ	ENSUMUG00000021879	lncRNA gene	Chr1:181564931-181567284 (-)
LP/J	ENSMUSG00230033489	lncRNA gene	Chr1:182139046-182141390 (-)
NOD/ShiLtJ	ENSMUSG00190039446	lncRNA gene	Chr1:177986425-177988769 (-)
NZO/HlLtJ	ENSMUSG00225011363	lncRNA gene	Chr1:185892108-185894452 (-)
PWK/PhJ	ENSLUMG00010016785	lncRNA gene	Chr1:176829331-176831688 (-)
SPRET/EiJ	ENSMSPG00010035562	lncRNA gene	Chr1:180289831-180292195 (-)
WSB/EiJ	ENSIUOG00005011737	lncRNA gene	Chr1:177199193-177201537 (-)

Homology

• Gene Tree
  Gm57186
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121043 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121043	Ensembl Gene Model | MGI Sequence Detail	2345	C57BL/6J
transcript	ENSMUST00000246971	Ensembl | MGI Sequence Detail	2345	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57186:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15557	Chr1:180721978-180722001 (-)	18 bp