Gm57184 Gene Detail

Summary

• Symbol
  Gm57184
• Name
  predicted gene, 57184

• Feature Type
  lncRNA gene
• IDs
  MGI:7338281
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:72275572-72311939 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1297 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338281	lncRNA gene	Chr1:72275572-72311939 (+)
129S1/SvImJ	ENSMUSG00200005034	lncRNA gene	Chr1:69934117-69964370 (+)
A/J	ENSMUSG00195031923	lncRNA gene	Chr1:69352333-69382569 (+)
AKR/J	ENSMUSG00220038633	lncRNA gene	Chr1:69505048-69535298 (+)
BALB/cJ	ENSMUSG00180031132	lncRNA gene	Chr1:69616431-69646679 (+)
C3H/HeJ	ENSMUSG00175000880	lncRNA gene	Chr1:69747687-69777918 (+)
C57BL/6NJ	ENSMUSG00215023822	lncRNA gene	Chr1:69662251-69692500 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022226	lncRNA gene	Chr1:69417307-69444478 (+)
CBA/J	ENSMUSG00210003260	lncRNA gene	Chr1:69444423-69474671 (+)
DBA/2J	ENSMUSG00185005252	lncRNA gene	Chr1:70534986-70565235 (+)
FVB/NJ	ENSMUSG00205015017	lncRNA gene	Chr1:69171035-69201290 (+)
JF1/MsJ	ENSUMUG00000004535	lncRNA gene	Chr1:69440269-69471116 (+)
LP/J	ENSMUSG00230002948	lncRNA gene	Chr1:70529244-70559497 (+)
NOD/ShiLtJ	ENSMUSG00190014435	lncRNA gene	Chr1:69661277-69691524 (+)
NZO/HlLtJ	ENSMUSG00225040535	lncRNA gene	Chr1:73744322-73774572 (+)
PWK/PhJ	ENSLUMG00010007859	lncRNA gene	Chr1:69039578-69070643 (+)
SPRET/EiJ	ENSMSPG00010018847	lncRNA gene	Chr1:71117377-71150447 (+)
WSB/EiJ	ENSIUOG00005029830	lncRNA gene	Chr1:69308661-69342486 (+)

Homology

• Gene Tree
  Gm57184
  

Sequences &
Gene Models

• All Sequences
  75

• Ensembl
  ENSMUSG00000121277 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121277	Ensembl Gene Model | MGI Sequence Detail	36368	C57BL/6J
transcript	ENSMUST00000322964	Ensembl | MGI Sequence Detail	2350	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm57184:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7294	Chr1:72275604-72275652 (+)	56 bp
Tssr7295	Chr1:72275658-72275683 (+)	99 bp
Tssr7296	Chr1:72275760-72275770 (+)	193 bp
Tssr7297	Chr1:72276575-72276580 (+)	1,006 bp