Gm57182 Gene Detail

Summary

• Symbol
  Gm57182
• Name
  predicted gene, 57182

• Feature Type
  lncRNA gene
• IDs
  MGI:7338277
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:167113317-167177997 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1734 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338277	lncRNA gene	Chr1:167113317-167177997 (-)
129S1/SvImJ	ENSMUSG00200047334	lncRNA gene	Chr1:164639203-164640269 (-)
A/J	ENSMUSG00195048709	lncRNA gene	Chr1:163946851-163947917 (-)
AKR/J	ENSMUSG00220032062	lncRNA gene	Chr1:163670421-163671487 (-)
BALB/cJ	ENSMUSG00180045548	lncRNA gene	Chr1:164192138-164193204 (-)
C3H/HeJ	ENSMUSG00175047263	lncRNA gene	Chr1:164295631-164296697 (-)
C57BL/6NJ	ENSMUSG00215044587	lncRNA gene	Chr1:164073751-164074817 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020697	lncRNA gene	Chr1:162651254-162652337 (-)
CBA/J	ENSMUSG00210041827	lncRNA gene	Chr1:164159833-164160907 (-)
DBA/2J	ENSMUSG00185012407	lncRNA gene	Chr1:168376165-168377239 (-)
FVB/NJ	ENSMUSG00205038789	lncRNA gene	Chr1:163156201-163157269 (-)
JF1/MsJ	ENSUMUG00000013906	lncRNA gene	Chr1:167529291-167530365 (-)
LP/J	ENSMUSG00230027356	lncRNA gene	Chr1:168027055-168028121 (-)
NOD/ShiLtJ	ENSMUSG00190042475	lncRNA gene	Chr1:163954791-163955857 (-)
NZO/HlLtJ	ENSMUSG00225005881	lncRNA gene	Chr1:171612270-171613339 (-)
PWK/PhJ	ENSLUMG00010034390	lncRNA gene	Chr1:162911530-162912601 (-)
SPRET/EiJ	ENSMSPG00010049475	lncRNA gene	Chr1:166429356-166430364 (-)
WSB/EiJ	ENSIUOG00005040591	lncRNA gene	Chr1:163382560-163383626 (-)

Homology

• Gene Tree
  Gm57182
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000121275 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121275	Ensembl Gene Model | MGI Sequence Detail	64681	C57BL/6J
transcript	ENSMUST00000247700	Ensembl | MGI Sequence Detail	1795	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57182:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14851	Chr1:167177929-167177939 (-)	63 bp
Tssr14849	Chr1:167158878-167158895 (-)	19,110 bp
Tssr14848	Chr1:167158828-167158875 (-)	19,145 bp
Tssr14847	Chr1:167136151-167136182 (-)	41,830 bp