Gm57180 Gene Detail

Summary

• Symbol
  Gm57180
• Name
  predicted gene, 57180

• Feature Type
  lncRNA gene
• IDs
  MGI:7338273
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:33751553-33759331 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  456 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338273	lncRNA gene	Chr1:33751553-33759331 (-)
129S1/SvImJ	ENSMUSG00200004524	lncRNA gene	Chr1:31299534-31300209 (-)
A/J	ENSMUSG00195044265	lncRNA gene	Chr1:30974651-30975326 (-)
AKR/J	ENSMUSG00220009278	lncRNA gene	Chr1:30996507-30997182 (-)
BALB/cJ	ENSMUSG00180012345	lncRNA gene	Chr1:31083860-31084535 (-)
C3H/HeJ	ENSMUSG00175001522	lncRNA gene	Chr1:30978978-30979653 (-)
C57BL/6NJ	ENSMUSG00215033853	lncRNA gene	Chr1:31060810-31061485 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003246	lncRNA gene	Chr1:31125630-31126317 (-)
CBA/J	ENSMUSG00210006177	lncRNA gene	Chr1:30822974-30823649 (-)
DBA/2J	ENSMUSG00185011504	lncRNA gene	Chr1:31888153-31888828 (-)
FVB/NJ	ENSMUSG00205040007	lncRNA gene	Chr1:31004430-31005105 (-)
JF1/MsJ	ENSUMUG00000030866	lncRNA gene	Chr1:31101648-31102325 (-)
LP/J	ENSMUSG00230027494	lncRNA gene	Chr1:31941745-31942420 (-)
NOD/ShiLtJ	ENSMUSG00190039799	lncRNA gene	Chr1:30990467-30991142 (-)
NZO/HlLtJ	ENSMUSG00225014664	lncRNA gene	Chr1:35208777-35209452 (-)
PWK/PhJ	ENSLUMG00010038254	lncRNA gene	Chr1:30681373-30682051 (-)
SPRET/EiJ	ENSMSPG00010029541	lncRNA gene	Chr1:32065458-32066133 (-)
WSB/EiJ	ENSIUOG00005038828	lncRNA gene	Chr1:30980844-30981519 (-)

Homology

• Gene Tree
  Gm57180
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000121274 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121274	Ensembl Gene Model | MGI Sequence Detail	7779	C57BL/6J
transcript	ENSMUST00000276980	Ensembl | MGI Sequence Detail	2210	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57180:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11196	Chr1:33759435-33759444 (-)	-109 bp
Tssr11195	Chr1:33759338-33759351 (-)	-14 bp
Tssr11194	Chr1:33759160-33759178 (-)	162 bp