Gm57179 Gene Detail

Summary

• Symbol
  Gm57179
• Name
  predicted gene, 57179

• Feature Type
  lncRNA gene
• IDs
  MGI:7338271
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:72844691-72845242 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338271	lncRNA gene	Chr1:72844691-72845242 (-)
129S1/SvImJ	ENSMUSG00200005144	lncRNA gene	Chr1:70507194-70507695 (-)
A/J	ENSMUSG00195032042	lncRNA gene	Chr1:69920722-69921223 (-)
AKR/J	ENSMUSG00220040199	lncRNA gene	Chr1:70072845-70073346 (-)
BALB/cJ	ENSMUSG00180031921	lncRNA gene	Chr1:70185700-70186201 (-)
C3H/HeJ	ENSMUSG00175000870	lncRNA gene	Chr1:70316035-70316536 (-)
C57BL/6NJ	ENSMUSG00215023009	lncRNA gene	Chr1:70231495-70231996 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022036	lncRNA gene	Chr1:69979170-69979671 (-)
CBA/J	ENSMUSG00210003274	lncRNA gene	Chr1:70013672-70014173 (-)
DBA/2J	ENSMUSG00185005370	lncRNA gene	Chr1:71103689-71104190 (-)
FVB/NJ	ENSMUSG00205015836	lncRNA gene	Chr1:69740331-69740832 (-)
JF1/MsJ	ENSUMUG00000004414	lncRNA gene	Chr1:70014560-70015061 (-)
LP/J	ENSMUSG00230002951	lncRNA gene	Chr1:71098404-71098905 (-)
NOD/ShiLtJ	ENSMUSG00190014190	lncRNA gene	Chr1:70230553-70231054 (-)
NZO/HlLtJ	ENSMUSG00225040611	lncRNA gene	Chr1:74313518-74314019 (-)
PWK/PhJ	ENSLUMG00010007653	lncRNA gene	Chr1:69613698-69614192 (-)
SPRET/EiJ	ENSMSPG00010019730	lncRNA gene	Chr1:71688168-71688669 (-)
WSB/EiJ	ENSIUOG00005029461	lncRNA gene	Chr1:69883138-69883638 (-)

Homology

• Gene Tree
  Gm57179
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121273 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121273	Ensembl Gene Model | MGI Sequence Detail	552	C57BL/6J
transcript	ENSMUST00000247692	Ensembl | MGI Sequence Detail	552	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57179:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12177	Chr1:72845240-72845245 (-)	-1 bp