Gm57177 Gene Detail

Summary

• Symbol
  Gm57177
• Name
  predicted gene, 57177

• Feature Type
  lncRNA gene
• IDs
  MGI:7338267
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:10060094-10062168 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338267	lncRNA gene	Chr1:10060094-10062168 (-)
129S1/SvImJ	ENSMUSG00200002840	lncRNA gene	Chr1:7384485-7386559 (-)
A/J	ENSMUSG00195003203	lncRNA gene	Chr1:7202226-7204300 (-)
AKR/J	ENSMUSG00220004029	lncRNA gene	Chr1:7302603-7304679 (-)
BALB/cJ	ENSMUSG00180009519	lncRNA gene	Chr1:7285783-7287859 (-)
C3H/HeJ	ENSMUSG00175000350	lncRNA gene	Chr1:7181861-7183933 (-)
C57BL/6NJ	ENSMUSG00215004217	lncRNA gene	Chr1:7244505-7246581 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002100	lncRNA gene	Chr1:7622642-7624729 (-)
CBA/J	ENSMUSG00210001969	lncRNA gene	Chr1:7041356-7043428 (-)
DBA/2J	ENSMUSG00185004601	lncRNA gene	Chr1:8130194-8132276 (-)
FVB/NJ	ENSMUSG00205005547	lncRNA gene	Chr1:7379602-7381676 (-)
JF1/MsJ	ENSUMUG00000004747	lncRNA gene	Chr1:7413962-7416043 (-)
LP/J	ENSMUSG00230002517	lncRNA gene	Chr1:8126181-8128255 (-)
NOD/ShiLtJ	ENSMUSG00190001469	lncRNA gene	Chr1:7194073-7196151 (-)
NZO/HlLtJ	ENSMUSG00225005702	lncRNA gene	Chr1:11528164-11530238 (-)
PWK/PhJ	ENSLUMG00010002417	lncRNA gene	Chr1:7018530-7020613 (-)
SPRET/EiJ	ENSMSPG00010014419	lncRNA gene	Chr1:7619323-7621385 (-)
WSB/EiJ	ENSIUOG00005011722	lncRNA gene	Chr1:7208994-7211076 (-)

Homology

• Gene Tree
  Gm57177
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121270 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121270	Ensembl Gene Model | MGI Sequence Detail	2075	C57BL/6J
transcript	ENSMUST00000247684	Ensembl | MGI Sequence Detail	2075	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57177:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10952	Chr1:10062161-10062174 (-)	0 bp
Tssr10951	Chr1:10062144-10062155 (-)	18 bp