Gm57176 Gene Detail

Summary

• Symbol
  Gm57176
• Name
  predicted gene, 57176

• Feature Type
  lncRNA gene
• IDs
  MGI:7338265
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:125363743-125364241 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338265	lncRNA gene	Chr1:125363743-125364241 (+)
129S1/SvImJ	ENSMUSG00200009773	lncRNA gene	Chr1:122932347-122932845 (+)
A/J	ENSMUSG00195045384	lncRNA gene	Chr1:122017417-122017915 (+)
AKR/J	ENSMUSG00220025769	lncRNA gene	Chr1:121872154-121872652 (+)
BALB/cJ	ENSMUSG00180040896	lncRNA gene	Chr1:122594086-122594584 (+)
C3H/HeJ	ENSMUSG00175047929	lncRNA gene	Chr1:122299468-122299966 (+)
C57BL/6NJ	ENSMUSG00215014378	lncRNA gene	Chr1:122282808-122283306 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006655	lncRNA gene	Chr1:121206997-121207495 (+)
CBA/J	ENSMUSG00210001406	lncRNA gene	Chr1:122144390-122144888 (+)
DBA/2J	ENSMUSG00185002186	lncRNA gene	Chr1:126533459-126533957 (+)
FVB/NJ	ENSMUSG00205013158	lncRNA gene	Chr1:121611360-121611858 (+)
JF1/MsJ	ENSUMUG00000003169	lncRNA gene	Chr1:125697636-125698134 (+)
LP/J	ENSMUSG00230001554	lncRNA gene	Chr1:126113363-126113861 (+)
NOD/ShiLtJ	ENSMUSG00190006848	lncRNA gene	Chr1:122163107-122163605 (+)
NZO/HlLtJ	ENSMUSG00225005277	lncRNA gene	Chr1:129837275-129837773 (+)
PWK/PhJ	ENSLUMG00010014957	lncRNA gene	Chr1:121306100-121306598 (+)
SPRET/EiJ	ENSMSPG00010046959	lncRNA gene	Chr1:124010552-124011047 (+)
WSB/EiJ	ENSIUOG00005048866	lncRNA gene	Chr1:121908897-121909395 (+)

Homology

• Gene Tree
  Gm57176
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121266 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121266	Ensembl Gene Model | MGI Sequence Detail	499	C57BL/6J
transcript	ENSMUST00000247659	Ensembl | MGI Sequence Detail	499	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57176:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8439	Chr1:125363723-125363748 (+)	-7 bp