Gm57172 Gene Detail

Summary

• Symbol
  Gm57172
• Name
  predicted gene, 57172

• Feature Type
  lncRNA gene
• IDs
  MGI:7338257
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:172202533-172205564 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338257	lncRNA gene	Chr1:172202533-172205564 (-)
129S1/SvImJ	ENSMUSG00200047516	lncRNA gene	Chr1:170141447-170141594 (-)
A/J	ENSMUSG00195048642	lncRNA gene	Chr1:169442933-169443080 (-)
AKR/J	ENSMUSG00220034871	lncRNA gene	Chr1:169174018-169174165 (-)
BALB/cJ	ENSMUSG00180045790	lncRNA gene	Chr1:169770082-169770229 (-)
C3H/HeJ	ENSMUSG00175048504	lncRNA gene	Chr1:169781057-169781204 (-)
C57BL/6NJ	ENSMUSG00215044781	lncRNA gene	Chr1:169161461-169161608 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047022	lncRNA gene	Chr1:167732533-167732680 (-)
CBA/J	ENSMUSG00210044463	lncRNA gene	Chr1:169647536-169647683 (-)
DBA/2J	ENSMUSG00185031531	lncRNA gene	Chr1:173949640-173949787 (-)
FVB/NJ	ENSMUSG00205040807	lncRNA gene	Chr1:168621744-168621891 (-)
JF1/MsJ	ENSUMUG00000020936	lncRNA gene	Chr1:172877374-172877521 (-)
LP/J	ENSMUSG00230034325	lncRNA gene	Chr1:173546262-173546409 (-)
NOD/ShiLtJ	ENSMUSG00190043050	lncRNA gene	Chr1:169456502-169456649 (-)
NZO/HlLtJ	ENSMUSG00225005466	lncRNA gene	Chr1:177126299-177126446 (-)
PWK/PhJ	ENSLUMG00010036606	lncRNA gene	Chr1:168409516-168409663 (-)
SPRET/EiJ	ENSMSPG00010049426	lncRNA gene	Chr1:171763778-171763919 (-)
WSB/EiJ	ENSIUOG00005041595	lncRNA gene	Chr1:168793490-168793637 (-)

Homology

• Gene Tree
  Gm57172
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121223 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121223	Ensembl Gene Model | MGI Sequence Detail	3032	C57BL/6J
transcript	ENSMUST00000247505	Ensembl | MGI Sequence Detail	3032	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57172:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15218	Chr1:172205548-172205567 (-)	6 bp