Gm57170 Gene Detail

Summary

• Symbol
  Gm57170
• Name
  predicted gene, 57170

• Feature Type
  lncRNA gene
• IDs
  MGI:7338253
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:86415363-86417119 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338253	lncRNA gene	Chr1:86415363-86417119 (+)
129S1/SvImJ	ENSMUSG00200039134	lncRNA gene	Chr1:83631308-83632918 (+)
A/J	ENSMUSG00195034720	lncRNA gene	Chr1:83203814-83205424 (+)
AKR/J	ENSMUSG00220045775	lncRNA gene	Chr1:83333144-83334759 (+)
BALB/cJ	ENSMUSG00180019242	lncRNA gene	Chr1:83502667-83504282 (+)
C3H/HeJ	ENSMUSG00175001473	lncRNA gene	Chr1:83382551-83384161 (+)
C57BL/6NJ	ENSMUSG00215032363	lncRNA gene	Chr1:83304526-83306141 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007976	lncRNA gene	Chr1:82957498-82959163 (+)
CBA/J	ENSMUSG00210012519	lncRNA gene	Chr1:83226982-83228597 (+)
DBA/2J	ENSMUSG00185017615	lncRNA gene	Chr1:87699264-87700879 (+)
FVB/NJ	ENSMUSG00205044541	lncRNA gene	Chr1:82638189-82639799 (+)
JF1/MsJ	ENSUMUG00000018998	lncRNA gene	Chr1:86471123-86472736 (+)
LP/J	ENSMUSG00230022631	lncRNA gene	Chr1:86977213-86978823 (+)
NOD/ShiLtJ	ENSMUSG00190036728	lncRNA gene	Chr1:83282214-83283829 (+)
NZO/HlLtJ	ENSMUSG00225004811	lncRNA gene	Chr1:90880031-90881641 (+)
PWK/PhJ	ENSLUMG00010046412	lncRNA gene	Chr1:82851720-82853333 (+)
SPRET/EiJ	ENSMSPG00010047912	lncRNA gene	Chr1:84854339-84856007 (+)
WSB/EiJ	ENSIUOG00005044223	lncRNA gene	Chr1:82884430-82886045 (+)

Homology

• Gene Tree
  Gm57170
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121071 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121071	Ensembl Gene Model | MGI Sequence Detail	1757	C57BL/6J
transcript	ENSMUST00000247071	Ensembl | MGI Sequence Detail	1757	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57170:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7758	Chr1:86415468-86415492 (+)	117 bp
Tssr7759	Chr1:86415493-86415553 (+)	160 bp
Tssr7760	Chr1:86416767-86416781 (+)	1,411 bp