Gm57169 Gene Detail

Summary

• Symbol
  Gm57169
• Name
  predicted gene, 57169

• Feature Type
  lncRNA gene
• IDs
  MGI:7338251
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:85525843-85527091 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  39

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338251	lncRNA gene	Chr1:85525843-85527091 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220045041	lncRNA gene	Chr1:82440382-82440516 (+)
BALB/cJ	ENSMUSG00180016995	lncRNA gene	Chr1:82613740-82613880 (+)
C3H/HeJ	ENSMUSG00175001594	lncRNA gene	Chr1:82501267-82501413 (+)
C57BL/6NJ	ENSMUSG00215032479	lncRNA gene	Chr1:82415474-82415629 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185017383	lncRNA gene	Chr1:86811230-86811385 (+)
DBA/2J	ENSMUSG00185018570	lncRNA gene	Chr1:86641515-86641670 (-)
DBA/2J	ENSMUSG00185018544	lncRNA gene	Chr1:86628436-86628591 (-)
DBA/2J	ENSMUSG00185018487	lncRNA gene	Chr1:86250017-86250157 (-)
DBA/2J	ENSMUSG00185018423	lncRNA gene	Chr1:85918281-85918439 (-)
DBA/2J	ENSMUSG00185018287	lncRNA gene	Chr1:85019919-85020059 (-)
DBA/2J	ENSMUSG00185018267	lncRNA gene	Chr1:84838307-84838447 (-)
DBA/2J	ENSMUSG00185018223	lncRNA gene	Chr1:84450464-84450604 (+)
DBA/2J	ENSMUSG00185018504	lncRNA gene	Chr1:86438689-86438850 (-)
DBA/2J	ENSMUSG00185018590	lncRNA gene	Chr1:86654614-86654781 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000026771	lncRNA gene	Chr1:82951840-82952001 (-)
JF1/MsJ	ENSUMUG00000020413	lncRNA gene	Chr1:85585836-85585988 (+)
JF1/MsJ	ENSUMUG00000026509	lncRNA gene	Chr1:82306622-82306762 (-)
JF1/MsJ	ENSUMUG00000027127	lncRNA gene	Chr1:84206469-84206633 (-)
JF1/MsJ	ENSUMUG00000026958	lncRNA gene	Chr1:83881854-83881994 (+)
LP/J	ENSMUSG00230023410	lncRNA gene	Chr1:85919843-85919998 (-)
LP/J	ENSMUSG00230023302	lncRNA gene	Chr1:84963514-84963654 (-)
LP/J	ENSMUSG00230023358	lncRNA gene	Chr1:85713257-85713442 (+)
LP/J	ENSMUSG00230023402	lncRNA gene	Chr1:85906768-85906923 (-)
LP/J	ENSMUSG00230023375	lncRNA gene	Chr1:85893693-85893848 (-)
LP/J	ENSMUSG00230023415	lncRNA gene	Chr1:85932942-85933109 (-)
LP/J	ENSMUSG00230023253	lncRNA gene	Chr1:84387977-84388117 (+)
LP/J	ENSMUSG00230021584	lncRNA gene	Chr1:86089554-86089709 (+)
LP/J	ENSMUSG00230023292	lncRNA gene	Chr1:84775776-84775916 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225005501	lncRNA gene	Chr1:89835742-89835909 (-)
NZO/HlLtJ	ENSMUSG00225005476	lncRNA gene	Chr1:89809567-89809722 (-)
NZO/HlLtJ	ENSMUSG00225005486	lncRNA gene	Chr1:89822646-89822801 (-)
NZO/HlLtJ	ENSMUSG00225004457	lncRNA gene	Chr1:89992352-89992507 (+)
NZO/HlLtJ	ENSMUSG00225005396	lncRNA gene	Chr1:89431178-89431318 (-)
NZO/HlLtJ	ENSMUSG00225005359	lncRNA gene	Chr1:89099428-89099586 (-)
NZO/HlLtJ	ENSMUSG00225005280	lncRNA gene	Chr1:88201183-88201323 (-)
NZO/HlLtJ	ENSMUSG00225005265	lncRNA gene	Chr1:88019580-88019720 (-)
NZO/HlLtJ	ENSMUSG00225005247	lncRNA gene	Chr1:87631806-87631946 (+)
NZO/HlLtJ	ENSMUSG00225005435	lncRNA gene	Chr1:89619831-89619992 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm57169
  

Sequences &
Gene Models

• All Sequences
  41

• Ensembl
  ENSMUSG00000121044 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121044	Ensembl Gene Model | MGI Sequence Detail	1249	C57BL/6J
transcript	ENSMUST00000246973	Ensembl | MGI Sequence Detail	1249	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57169:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7662	Chr1:85525851-85525870 (+)	18 bp