Gm57166 Gene Detail

Summary

• Symbol
  Gm57166
• Name
  predicted gene, 57166

• Feature Type
  lncRNA gene
• IDs
  MGI:7338245
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:181060713-181062119 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338245	lncRNA gene	Chr1:181060713-181062119 (-)
129S1/SvImJ	ENSMUSG00200023767	lncRNA gene	Chr1:178814894-178815968 (-)
A/J	ENSMUSG00195043315	lncRNA gene	Chr1:178432138-178433211 (-)
AKR/J	ENSMUSG00220021958	lncRNA gene	Chr1:177666450-177667523 (-)
BALB/cJ	ENSMUSG00180040121	lncRNA gene	Chr1:178466112-178467186 (-)
C3H/HeJ	ENSMUSG00175041672	lncRNA gene	Chr1:178641902-178642976 (-)
C57BL/6NJ	ENSMUSG00215031392	lncRNA gene	Chr1:177866599-177867673 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043865	lncRNA gene	Chr1:176393486-176394558 (-)
CBA/J	ENSMUSG00210019063	lncRNA gene	Chr1:178315017-178316090 (-)
DBA/2J	ENSMUSG00185037110	lncRNA gene	Chr1:182934415-182935488 (-)
FVB/NJ	ENSMUSG00205039949	lncRNA gene	Chr1:177362709-177363783 (-)
JF1/MsJ	ENSUMUG00000005860	lncRNA gene	Chr1:181912630-181913701 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190034967	lncRNA gene	Chr1:178327738-178328812 (-)
NZO/HlLtJ	ENSMUSG00225011157	lncRNA gene	Chr1:186233588-186234661 (-)
PWK/PhJ	ENSLUMG00010016832	lncRNA gene	Chr1:177174543-177175617 (-)
SPRET/EiJ	ENSMSPG00010035597	lncRNA gene	Chr1:180653313-180654378 (-)
WSB/EiJ	ENSIUOG00005011640	lncRNA gene	Chr1:177541028-177542099 (-)

Homology

• Gene Tree
  Gm57166
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000121026 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121026	Ensembl Gene Model | MGI Sequence Detail	1407	C57BL/6J
transcript	ENSMUST00000246909	Ensembl | MGI Sequence Detail	1407	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57166:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15580	Chr1:181061984-181062024 (-)	115 bp