Gm57165 Gene Detail

Summary

• Symbol
  Gm57165
• Name
  predicted gene, 57165

• Feature Type
  lncRNA gene
• IDs
  MGI:7338243
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:60648199-60749831 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  973 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338243	lncRNA gene	Chr1:60648199-60749831 (+)
129S1/SvImJ	ENSMUSG00200019062	lncRNA gene	Chr1:58148121-58167034 (+)
A/J	ENSMUSG00195029867	lncRNA gene	Chr1:57687450-57706368 (+)
AKR/J	ENSMUSG00220040616	lncRNA gene	Chr1:57767142-57786510 (+)
BALB/cJ	ENSMUSG00180014567	lncRNA gene	Chr1:57917199-57936567 (+)
C3H/HeJ	ENSMUSG00175001177	lncRNA gene	Chr1:58064790-58083706 (+)
C57BL/6NJ	ENSMUSG00215032807	lncRNA gene	Chr1:57996655-58015569 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013547	lncRNA gene	Chr1:57849432-57868231 (+)
CBA/J	ENSMUSG00210054178	lncRNA gene	Chr1:57750450-57769365 (+)
DBA/2J	ENSMUSG00185055779	lncRNA gene	Chr1:58869496-58888411 (+)
FVB/NJ	ENSMUSG00205026757	lncRNA gene	Chr1:57710625-57729546 (+)
JF1/MsJ	ENSUMUG00000045835	lncRNA gene	Chr1:57848761-57867877 (+)
LP/J	ENSMUSG00230030079	lncRNA gene	Chr1:58869984-58888897 (+)
NOD/ShiLtJ	ENSMUSG00190040243	lncRNA gene	Chr1:57903725-57923096 (+)
NZO/HlLtJ	ENSMUSG00225001470	lncRNA gene	Chr1:62082964-62102074 (+)
PWK/PhJ	ENSLUMG00010026472	lncRNA gene	Chr1:57360885-57380027 (+)
SPRET/EiJ	ENSMSPG00010025916	lncRNA gene	Chr1:59290115-59309142 (+)
WSB/EiJ	ENSIUOG00005022453	lncRNA gene	Chr1:57532191-57551096 (+)

Homology

• Gene Tree
  Gm57165
  

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120763 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120763	Ensembl Gene Model | MGI Sequence Detail	101633	C57BL/6J
transcript	ENSMUST00000367534	Ensembl | MGI Sequence Detail	891	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57165:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6930	Chr1:60648360-60648377 (+)	170 bp
Tssr6931	Chr1:60648381-60648388 (+)	186 bp