Gm57161 Gene Detail

Summary

• Symbol
  Gm57161
• Name
  predicted gene, 57161

• Feature Type
  lncRNA gene
• IDs
  MGI:7338235
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:135614248-135638876 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  842 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338235	lncRNA gene	Chr1:135614248-135638876 (+)
129S1/SvImJ	ENSMUSG00200008257	lncRNA gene	Chr1:133229394-133251734 (+)
A/J	ENSMUSG00195016913	lncRNA gene	Chr1:132303008-132324979 (+)
AKR/J	ENSMUSG00220051073	lncRNA gene	Chr1:132181497-132203844 (+)
BALB/cJ	ENSMUSG00180039985	lncRNA gene	Chr1:132842486-132864997 (+)
C3H/HeJ	ENSMUSG00175047692	lncRNA gene	Chr1:132547121-132569090 (+)
C57BL/6NJ	ENSMUSG00215045776	lncRNA gene	Chr1:132544331-132566837 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039864	lncRNA gene	Chr1:131475654-131497636 (+)
CBA/J	ENSMUSG00210028436	lncRNA gene	Chr1:132477452-132499426 (+)
DBA/2J	ENSMUSG00185034444	lncRNA gene	Chr1:136852617-136874947 (+)
FVB/NJ	ENSMUSG00205046707	lncRNA gene	Chr1:131813137-131835110 (+)
JF1/MsJ	ENSUMUG00000053269	lncRNA gene	Chr1:135976294-135998826 (+)
LP/J	ENSMUSG00230039829	lncRNA gene	Chr1:136377131-136399636 (+)
NOD/ShiLtJ	ENSMUSG00190047456	lncRNA gene	Chr1:132491529-132513498 (+)
NZO/HlLtJ	ENSMUSG00225020385	lncRNA gene	Chr1:140144305-140166618 (+)
PWK/PhJ	ENSLUMG00010029885	lncRNA gene	Chr1:131600889-131623516 (+)
SPRET/EiJ	ENSMSPG00010012235	lncRNA gene	Chr1:134402923-134424966 (+)
WSB/EiJ	ENSIUOG00005029077	lncRNA gene	Chr1:132236282-132258198 (+)

Homology

• Gene Tree
  Gm57161
  

Sequences &
Gene Models

• All Sequences
  40

• Ensembl
  ENSMUSG00000120094 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120094	Ensembl Gene Model | MGI Sequence Detail	24629	C57BL/6J
transcript	ENSMUST00000328884	Ensembl | MGI Sequence Detail	1953	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57161:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8963	Chr1:135614644-135614667 (+)	408 bp
Tssr8964	Chr1:135614812-135614826 (+)	571 bp
Tssr8965	Chr1:135614844-135614855 (+)	602 bp