Gm57160 Gene Detail

Summary

• Symbol
  Gm57160
• Name
  predicted gene, 57160

• Feature Type
  lncRNA gene
• IDs
  MGI:7338233
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:128520112-128520972 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338233	lncRNA gene	Chr1:128520112-128520972 (+)
129S1/SvImJ	ENSMUSG00200009080	lncRNA gene	Chr1:126089658-126090248 (+)
A/J	ENSMUSG00195044982	lncRNA gene	Chr1:125157073-125157663 (+)
AKR/J	ENSMUSG00220051034	lncRNA gene	Chr1:125026527-125027117 (+)
BALB/cJ	ENSMUSG00180041264	lncRNA gene	Chr1:125744302-125744892 (+)
C3H/HeJ	ENSMUSG00175045921	lncRNA gene	Chr1:125425686-125426276 (+)
C57BL/6NJ	ENSMUSG00215046223	lncRNA gene	Chr1:125441752-125442343 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040254	lncRNA gene	Chr1:124371477-124372067 (+)
CBA/J	ENSMUSG00210029047	lncRNA gene	Chr1:125308375-125308965 (+)
DBA/2J	ENSMUSG00185002103	lncRNA gene	Chr1:129688473-129689063 (+)
FVB/NJ	ENSMUSG00205046593	lncRNA gene	Chr1:124650136-124650726 (+)
JF1/MsJ	ENSUMUG00000003263	lncRNA gene	Chr1:128797611-128798202 (+)
LP/J	ENSMUSG00230001646	lncRNA gene	Chr1:129268153-129268743 (+)
NOD/ShiLtJ	ENSMUSG00190048029	lncRNA gene	Chr1:125311533-125312123 (+)
NZO/HlLtJ	ENSMUSG00225021972	lncRNA gene	Chr1:133004762-133005352 (+)
PWK/PhJ	ENSLUMG00010030104	lncRNA gene	Chr1:124435119-124435710 (+)
SPRET/EiJ	ENSMSPG00010047005	lncRNA gene	Chr1:127198733-127199322 (+)
WSB/EiJ	ENSIUOG00005048460	lncRNA gene	Chr1:125047503-125048090 (+)

Homology

• Gene Tree
  Gm57160
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121003 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121003	Ensembl Gene Model | MGI Sequence Detail	861	C57BL/6J
transcript	ENSMUST00000246825	Ensembl | MGI Sequence Detail	861	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57160:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8536	Chr1:128518691-128518736 (+)	-1,398 bp
Tssr8537	Chr1:128519014-128519027 (+)	-1,091 bp
Tssr8538	Chr1:128519042-128519053 (+)	-1,064 bp
Tssr8539	Chr1:128519056-128519098 (+)	-1,035 bp
Tssr8540	Chr1:128520182-128520195 (+)	77 bp