Gm57159 Gene Detail

Summary

• Symbol
  Gm57159
• Name
  predicted gene, 57159

• Feature Type
  lncRNA gene
• IDs
  MGI:7338231
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:135868803-135872354 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338231	lncRNA gene	Chr4:135868803-135872354 (-)
129S1/SvImJ	ENSMUSG00200021241	lncRNA gene	Chr4:129283407-129283919 (-)
A/J	ENSMUSG00195044506	lncRNA gene	Chr4:130640083-130640596 (-)
AKR/J	ENSMUSG00220048697	lncRNA gene	Chr4:129634220-129634733 (-)
BALB/cJ	ENSMUSG00180050355	lncRNA gene	Chr4:128273467-128273980 (-)
C3H/HeJ	ENSMUSG00175047365	lncRNA gene	Chr4:129293458-129293971 (-)
C57BL/6NJ	ENSMUSG00215052421	lncRNA gene	Chr4:130809131-130809644 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048494	lncRNA gene	Chr4:130212350-130212862 (-)
CBA/J	ENSMUSG00210053895	lncRNA gene	Chr4:128917389-128917902 (-)
DBA/2J	ENSMUSG00185053538	lncRNA gene	Chr4:130446784-130447297 (-)
FVB/NJ	ENSMUSG00205049334	lncRNA gene	Chr4:128690236-128690749 (-)
JF1/MsJ	ENSUMUG00000049242	lncRNA gene	Chr4:131139847-131140359 (-)
LP/J	ENSMUSG00230041855	lncRNA gene	Chr4:134221620-134222132 (-)
NOD/ShiLtJ	ENSMUSG00190049739	lncRNA gene	Chr4:128678928-128679441 (-)
NZO/HlLtJ	ENSMUSG00225027038	lncRNA gene	Chr4:140176564-140177076 (-)
PWK/PhJ	ENSLUMG00010050999	lncRNA gene	Chr4:128125598-128126111 (-)
SPRET/EiJ	ENSMSPG00010046664	lncRNA gene	Chr4:130191527-130192034 (-)
WSB/EiJ	ENSIUOG00005044143	lncRNA gene	Chr4:128581834-128582347 (-)

Homology

• Gene Tree
  Gm57159
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121154 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121154	Ensembl Gene Model | MGI Sequence Detail	3552	C57BL/6J
transcript	ENSMUST00000341851	Ensembl | MGI Sequence Detail	2169	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9