Gm57158 Gene Detail

Summary

• Symbol
  Gm57158
• Name
  predicted gene, 57158

• Feature Type
  lncRNA gene
• IDs
  MGI:7338229
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:138858410-138858792 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338229	lncRNA gene	Chr4:138858410-138858792 (+)
129S1/SvImJ	ENSMUSG00200046288	lncRNA gene	Chr4:132272546-132272928 (+)
A/J	ENSMUSG00195035858	lncRNA gene	Chr4:133615974-133616356 (+)
AKR/J	ENSMUSG00220048577	lncRNA gene	Chr4:132611261-132611659 (+)
BALB/cJ	ENSMUSG00180049538	lncRNA gene	Chr4:131250848-131251246 (+)
C3H/HeJ	ENSMUSG00175049086	lncRNA gene	Chr4:132279517-132279915 (+)
C57BL/6NJ	ENSMUSG00215051102	lncRNA gene	Chr4:133801540-133801922 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013870	lncRNA gene	Chr4:133240502-133240896 (+)
CBA/J	ENSMUSG00210053991	lncRNA gene	Chr4:131903296-131903692 (+)
DBA/2J	ENSMUSG00185051411	lncRNA gene	Chr4:133416409-133416807 (+)
FVB/NJ	ENSMUSG00205049207	lncRNA gene	Chr4:131666886-131667284 (+)
JF1/MsJ	ENSUMUG00000046679	lncRNA gene	Chr4:134114116-134114498 (+)
LP/J	ENSMUSG00230040657	lncRNA gene	Chr4:137211113-137211495 (+)
NOD/ShiLtJ	ENSMUSG00190033370	lncRNA gene	Chr4:131674900-131675282 (+)
NZO/HlLtJ	ENSMUSG00225010389	lncRNA gene	Chr4:143165820-143166202 (+)
PWK/PhJ	ENSLUMG00010051233	lncRNA gene	Chr4:131103793-131104191 (+)
SPRET/EiJ	ENSMSPG00010037430	lncRNA gene	Chr4:133154387-133154749 (+)
WSB/EiJ	ENSIUOG00005044091	lncRNA gene	Chr4:131555462-131555860 (+)

Homology

• Gene Tree
  Gm57158
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120910 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120910	Ensembl Gene Model | MGI Sequence Detail	383	C57BL/6J
transcript	ENSMUST00000246441	Ensembl | MGI Sequence Detail	383	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57158:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39897	Chr4:138857646-138857668 (+)	-753 bp
Tssr39898	Chr4:138858427-138858474 (+)	41 bp