Gm57157 Gene Detail

Summary

• Symbol
  Gm57157
• Name
  predicted gene, 57157

• Feature Type
  lncRNA gene
• IDs
  MGI:7338227
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:116977750-116979715 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338227	lncRNA gene	Chr4:116977750-116979715 (+)
129S1/SvImJ	ENSMUSG00200049717	lncRNA gene	Chr4:110874257-110876047 (+)
A/J	ENSMUSG00195033278	lncRNA gene	Chr4:112141522-112143312 (+)
AKR/J	ENSMUSG00220012797	lncRNA gene	Chr4:111488019-111489809 (+)
BALB/cJ	ENSMUSG00180047356	lncRNA gene	Chr4:110208213-110210009 (+)
C3H/HeJ	ENSMUSG00175043751	lncRNA gene	Chr4:111222576-111224372 (+)
C57BL/6NJ	ENSMUSG00215039792	lncRNA gene	Chr4:112302177-112303967 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022912	lncRNA gene	Chr4:111006434-111008224 (+)
CBA/J	ENSMUSG00210053360	lncRNA gene	Chr4:110836290-110838086 (+)
DBA/2J	ENSMUSG00185048950	lncRNA gene	Chr4:112367130-112368920 (+)
FVB/NJ	ENSMUSG00205044297	lncRNA gene	Chr4:110305645-110307441 (+)
JF1/MsJ	ENSUMUG00000050582	lncRNA gene	Chr4:112272763-112274553 (+)
LP/J	ENSMUSG00230047216	lncRNA gene	Chr4:115691488-115693278 (+)
NOD/ShiLtJ	ENSMUSG00190049121	lncRNA gene	Chr4:110204306-110206096 (+)
NZO/HlLtJ	ENSMUSG00225011146	lncRNA gene	Chr4:121179939-121181729 (+)
PWK/PhJ	ENSLUMG00010047926	lncRNA gene	Chr4:109671149-109672939 (+)
SPRET/EiJ	ENSMSPG00010030360	lncRNA gene	Chr4:111771108-111773134 (+)
WSB/EiJ	ENSIUOG00005044722	lncRNA gene	Chr4:110529246-110531036 (+)

Homology

• Gene Tree
  Gm57157
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121149 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121149	Ensembl Gene Model | MGI Sequence Detail	1966	C57BL/6J
transcript	ENSMUST00000247312	Ensembl | MGI Sequence Detail	1966	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm57157:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38597	Chr4:116977789-116977803 (+)	46 bp
Tssr38598	Chr4:116977917-116977936 (+)	177 bp
Tssr38599	Chr4:116977937-116977948 (+)	193 bp