Gm57148 Gene Detail

Summary

• Symbol
  Gm57148
• Name
  predicted gene, 57148

• Feature Type
  lncRNA gene
• IDs
  MGI:7338209
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:166166838-166175190 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  344 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338209	lncRNA gene	Chr1:166166838-166175190 (+)
129S1/SvImJ	ENSMUSG00200047978	lncRNA gene	Chr1:163668722-163676969 (+)
A/J	ENSMUSG00195049248	lncRNA gene	Chr1:162977383-162985630 (+)
AKR/J	ENSMUSG00220014605	lncRNA gene	Chr1:162765909-162774156 (+)
BALB/cJ	ENSMUSG00180045928	lncRNA gene	Chr1:163222720-163230969 (+)
C3H/HeJ	ENSMUSG00175048297	lncRNA gene	Chr1:163318476-163326723 (+)
C57BL/6NJ	ENSMUSG00215045064	lncRNA gene	Chr1:163104400-163112647 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020837	lncRNA gene	Chr1:161727656-161735930 (+)
CBA/J	ENSMUSG00210044054	lncRNA gene	Chr1:163192933-163201179 (+)
DBA/2J	ENSMUSG00185012127	lncRNA gene	Chr1:167438170-167446408 (+)
FVB/NJ	ENSMUSG00205010342	lncRNA gene	Chr1:162236934-162245178 (+)
JF1/MsJ	ENSUMUG00000012341	lncRNA gene	Chr1:166596487-166604726 (+)
LP/J	ENSMUSG00230026519	lncRNA gene	Chr1:167057750-167066007 (+)
NOD/ShiLtJ	ENSMUSG00190041887	lncRNA gene	Chr1:163028208-163036454 (+)
NZO/HlLtJ	ENSMUSG00225004748	lncRNA gene	Chr1:170643578-170651825 (+)
PWK/PhJ	ENSLUMG00010047043	lncRNA gene	Chr1:161959728-161967997 (+)
SPRET/EiJ	ENSMSPG00010049177	lncRNA gene	Chr1:165451223-165462199 (+)
WSB/EiJ	ENSIUOG00005015920	lncRNA gene	Chr1:162493743-162501994 (+)

Homology

• Gene Tree
  Gm57148
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120355 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120355	Ensembl Gene Model | MGI Sequence Detail	8353	C57BL/6J
transcript	ENSMUST00000324724	Ensembl | MGI Sequence Detail	1089	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57148:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9873	Chr1:166166989-166166996 (+)	155 bp