Gm57144 Gene Detail

Summary

• Symbol
  Gm57144
• Name
  predicted gene, 57144

• Feature Type
  lncRNA gene
• IDs
  MGI:7338201
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:86453106-86454272 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338201	lncRNA gene	Chr1:86453106-86454272 (-)
129S1/SvImJ	ENSMUSG00200039109	lncRNA gene	Chr1:83669260-83669751 (-)
A/J	ENSMUSG00195034652	lncRNA gene	Chr1:83241773-83242264 (-)
AKR/J	ENSMUSG00220045733	lncRNA gene	Chr1:83371132-83371623 (-)
BALB/cJ	ENSMUSG00180019178	lncRNA gene	Chr1:83540659-83541150 (-)
C3H/HeJ	ENSMUSG00175001467	lncRNA gene	Chr1:83420509-83421000 (-)
C57BL/6NJ	ENSMUSG00215032145	lncRNA gene	Chr1:83342520-83343011 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007971	lncRNA gene	Chr1:82995667-82996153 (-)
CBA/J	ENSMUSG00210012512	lncRNA gene	Chr1:83264969-83265460 (-)
DBA/2J	ENSMUSG00185017579	lncRNA gene	Chr1:87737266-87737757 (-)
FVB/NJ	ENSMUSG00205044455	lncRNA gene	Chr1:82676140-82676631 (-)
JF1/MsJ	ENSUMUG00000018953	lncRNA gene	Chr1:86509605-86510095 (-)
LP/J	ENSMUSG00230022622	lncRNA gene	Chr1:87015167-87015658 (-)
NOD/ShiLtJ	ENSMUSG00190036572	lncRNA gene	Chr1:83320198-83320689 (-)
NZO/HlLtJ	ENSMUSG00225004799	lncRNA gene	Chr1:90917983-90918474 (-)
PWK/PhJ	ENSLUMG00010046373	lncRNA gene	Chr1:82889814-82890305 (-)
SPRET/EiJ	ENSMSPG00010047885	lncRNA gene	Chr1:84893600-84894091 (-)
WSB/EiJ	ENSIUOG00005044174	lncRNA gene	Chr1:82922450-82922941 (-)

Homology

• Gene Tree
  Gm57144
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000119944 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119944	Ensembl Gene Model | MGI Sequence Detail	1167	C57BL/6J
transcript	ENSMUST00000240775	Ensembl | MGI Sequence Detail	1167	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57144:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12811	Chr1:86454270-86454281 (-)	-4 bp
Tssr12810	Chr1:86453927-86453969 (-)	324 bp