Gm57142 Gene Detail

Summary

• Symbol
  Gm57142
• Name
  predicted gene, 57142

• Feature Type
  lncRNA gene
• IDs
  MGI:7338197
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:165872193-165884096 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  412 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338197	lncRNA gene	Chr1:165872193-165884096 (-)
129S1/SvImJ	ENSMUSG00200047886	lncRNA gene	Chr1:163376298-163378652 (-)
A/J	ENSMUSG00195049167	lncRNA gene	Chr1:162684939-162687293 (-)
AKR/J	ENSMUSG00220014638	lncRNA gene	Chr1:162473452-162475806 (-)
BALB/cJ	ENSMUSG00180042135	lncRNA gene	Chr1:162930284-162932638 (-)
C3H/HeJ	ENSMUSG00175045168	lncRNA gene	Chr1:163026064-163028418 (-)
C57BL/6NJ	ENSMUSG00215041932	lncRNA gene	Chr1:162811972-162814326 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020933	lncRNA gene	Chr1:161442830-161445191 (-)
CBA/J	ENSMUSG00210021700	lncRNA gene	Chr1:162900507-162902861 (-)
DBA/2J	ENSMUSG00185012032	lncRNA gene	Chr1:167145447-167147801 (-)
FVB/NJ	ENSMUSG00205010529	lncRNA gene	Chr1:161945145-161947499 (-)
JF1/MsJ	ENSUMUG00000011874	lncRNA gene	Chr1:166296563-166298915 (-)
LP/J	ENSMUSG00230026480	lncRNA gene	Chr1:166765321-166767675 (-)
NOD/ShiLtJ	ENSMUSG00190040927	lncRNA gene	Chr1:162731246-162733600 (-)
NZO/HlLtJ	ENSMUSG00225004718	lncRNA gene	Chr1:170351162-170353516 (-)
PWK/PhJ	ENSLUMG00010045192	lncRNA gene	Chr1:161667020-161669374 (-)
SPRET/EiJ	ENSMSPG00010049268	lncRNA gene	Chr1:165171516-165174712 (-)
WSB/EiJ	ENSIUOG00005016048	lncRNA gene	Chr1:162211921-162214275 (-)

Homology

• Gene Tree
  Gm57142
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000120395 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120395	Ensembl Gene Model | MGI Sequence Detail	11904	C57BL/6J
transcript	ENSMUST00000243037	Ensembl | MGI Sequence Detail	2327	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm57142:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14807	Chr1:165876858-165876868 (-)	7,233 bp
Tssr14806	Chr1:165875410-165875419 (-)	8,681 bp
Tssr14805	Chr1:165875392-165875403 (-)	8,698 bp