Gm57141 Gene Detail

Summary

• Symbol
  Gm57141
• Name
  predicted gene, 57141

• Feature Type
  lncRNA gene
• IDs
  MGI:7338195
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:42880353-42880985 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338195	lncRNA gene	Chr4:42880353-42880985 (+)
129S1/SvImJ	ENSMUSG00200005490	lncRNA gene	Chr4:38916266-38916888 (+)
A/J	ENSMUSG00195003734	lncRNA gene	Chr4:39398978-39399600 (+)
AKR/J	ENSMUSG00220038160	lncRNA gene	Chr4:39082668-39083303 (+)
BALB/cJ	ENSMUSG00180028298	lncRNA gene	Chr4:38985761-38986383 (+)
C3H/HeJ	ENSMUSG00175023669	lncRNA gene	Chr4:39130119-39130741 (+)
C57BL/6NJ	ENSMUSG00215034461	lncRNA gene	Chr4:38897188-38897810 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210008116	lncRNA gene	Chr4:38816470-38817105 (+)
DBA/2J	ENSMUSG00185006810	lncRNA gene	Chr4:39179924-39180559 (+)
FVB/NJ	ENSMUSG00205027504	lncRNA gene	Chr4:38423139-38423774 (+)
JF1/MsJ	ENSUMUG00000029468	lncRNA gene	Chr4:39424028-39424668 (+)
LP/J	ENSMUSG00230042650	lncRNA gene	Chr4:42728143-42728765 (+)
NOD/ShiLtJ	ENSMUSG00190006496	lncRNA gene	Chr4:39041060-39041695 (+)
NZO/HlLtJ	ENSMUSG00225007353	lncRNA gene	Chr4:47327765-47328400 (+)
PWK/PhJ	ENSLUMG00010006730	lncRNA gene	Chr4:38424122-38424765 (+)
SPRET/EiJ	ENSMSPG00010026087	lncRNA gene	Chr4:39350480-39351112 (+)
WSB/EiJ	ENSIUOG00005050104	lncRNA gene	Chr4:38793991-38794613 (+)

Homology

• Gene Tree
  Gm57141
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000120475 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120475	Ensembl Gene Model | MGI Sequence Detail	633	C57BL/6J
transcript	ENSMUST00000243568	Ensembl | MGI Sequence Detail	633	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57141:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1153	Chr4:42880376-42880405 (+)	38 bp
Tssr36899	Chr4:42880726-42880743 (+)	382 bp