Gm57139 Gene Detail

Summary

• Symbol
  Gm57139
• Name
  predicted gene, 57139

• Feature Type
  lncRNA gene
• IDs
  MGI:7338191
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:91341152-91343508 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338191	lncRNA gene	Chr1:91341152-91343508 (+)
129S1/SvImJ	ENSMUSG00200038594	lncRNA gene	Chr1:88567375-88569731 (+)
A/J	ENSMUSG00195034970	lncRNA gene	Chr1:88119268-88121621 (+)
AKR/J	ENSMUSG00220046004	lncRNA gene	Chr1:88276713-88279068 (+)
BALB/cJ	ENSMUSG00180019085	lncRNA gene	Chr1:88433790-88436144 (+)
C3H/HeJ	ENSMUSG00175001459	lncRNA gene	Chr1:88305114-88307466 (+)
C57BL/6NJ	ENSMUSG00215032987	lncRNA gene	Chr1:88241619-88243975 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007903	lncRNA gene	Chr1:87875185-87877535 (+)
CBA/J	ENSMUSG00210012425	lncRNA gene	Chr1:88150391-88152742 (+)
DBA/2J	ENSMUSG00185014405	lncRNA gene	Chr1:92620171-92622528 (+)
FVB/NJ	ENSMUSG00205045896	lncRNA gene	Chr1:87564761-87567118 (+)
JF1/MsJ	ENSUMUG00000022146	lncRNA gene	Chr1:91365138-91367493 (+)
LP/J	ENSMUSG00230023709	lncRNA gene	Chr1:91903530-91905886 (+)
NOD/ShiLtJ	ENSMUSG00190031736	lncRNA gene	Chr1:88201398-88203753 (+)
NZO/HlLtJ	ENSMUSG00225004255	lncRNA gene	Chr1:95804929-95807285 (+)
PWK/PhJ	ENSLUMG00010047294	lncRNA gene	Chr1:87757252-87759614 (+)
SPRET/EiJ	ENSMSPG00010048363	lncRNA gene	Chr1:89789551-89791900 (+)
WSB/EiJ	ENSIUOG00005043412	lncRNA gene	Chr1:87864239-87866592 (+)

Homology

• Gene Tree
  Gm57139
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120874 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120874	Ensembl Gene Model | MGI Sequence Detail	2357	C57BL/6J
transcript	ENSMUST00000246229	Ensembl | MGI Sequence Detail	1866	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57139:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8083	Chr1:91341104-91341135 (+)	-32 bp
Tssr8084	Chr1:91341145-91341161 (+)	1 bp