Gm57136 Gene Detail

Summary

• Symbol
  Gm57136
• Name
  predicted gene, 57136

• Feature Type
  lncRNA gene
• IDs
  MGI:7338185
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:155119076-155134831 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  374 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7338185	lncRNA gene	Chr1:155119076-155134831 (+)
129S1/SvImJ	ENSMUSG00200003032	lncRNA gene	Chr1:152563123-152565067 (+)
A/J	ENSMUSG00195014063	lncRNA gene	Chr1:151951159-151953101 (+)
AKR/J	ENSMUSG00220006480	lncRNA gene	Chr1:151750366-151752310 (+)
BALB/cJ	ENSMUSG00180034511	lncRNA gene	Chr1:152170434-152172378 (+)
C3H/HeJ	ENSMUSG00175002995	lncRNA gene	Chr1:152209590-152211532 (+)
C57BL/6NJ	ENSMUSG00215003984	lncRNA gene	Chr1:152106108-152108052 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006094	lncRNA gene	Chr1:150754939-150756889 (+)
CBA/J	ENSMUSG00210034309	lncRNA gene	Chr1:152113012-152114954 (+)
DBA/2J	ENSMUSG00185045716	lncRNA gene	Chr1:156390760-156392706 (+)
FVB/NJ	ENSMUSG00205030885	lncRNA gene	Chr1:151245369-151247311 (+)
JF1/MsJ	ENSUMUG00000023814	lncRNA gene	Chr1:155546285-155548240 (+)
LP/J	ENSMUSG00230017162	lncRNA gene	Chr1:155947798-155949729 (+)
NOD/ShiLtJ	ENSMUSG00190013886	lncRNA gene	Chr1:151961180-151963124 (+)
NZO/HlLtJ	ENSMUSG00225006530	lncRNA gene	Chr1:159626284-159628226 (+)
PWK/PhJ	ENSLUMG00010031605	lncRNA gene	Chr1:150897463-150899410 (+)
SPRET/EiJ	ENSMSPG00010043400	lncRNA gene	Chr1:154238669-154240571 (+)
WSB/EiJ	ENSIUOG00005024671	lncRNA gene	Chr1:151529158-151531084 (+)

Homology

• Gene Tree
  Gm57136
  

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120842 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120842	Ensembl Gene Model | MGI Sequence Detail	15756	C57BL/6J
transcript	ENSMUST00000246068	Ensembl | MGI Sequence Detail	1979	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm57136:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9535	Chr1:155120357-155120368 (+)	1,287 bp